Os06g0165100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0165100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.11 | 0.534 | 5.97 | -1.09 | 0.952 | 1.16 | 1.28 | 2.21 | -3.34 | 22.2 | 19.35 | 20 | -- | -- |
| 133.59 | 0.538 | 6.01 | -1.41 | 0.882 | 1.18 | 1 | -- | -3.39 | 21.9 | 18.48 | 109 | -- | -- |
| 133.27 | 0.538 | 5.98 | -1.32 | 0.811 | 1.26 | -- | 1.3 | -3.38 | 22.4 | 17.44 | 157 | -- | -- |
| 135.05 | 0.541 | 6.01 | -1.53 | 0.834 | 1.32 | -- | -- | -3.44 | 22.5 | 18.05 | 139 | -- | -- |
| 154.8 | 0.579 | 5.96 | -1.3 | -- | 1.31 | -- | 1.49 | -3.39 | -- | 18.7 | 586 | -- | -- |
| 155.14 | 0.584 | 5.97 | -1.2 | 0.858 | -- | 1.17 | -- | -3.23 | 20.2 | -- | -- | -- | -- |
| 159.32 | 0.591 | 5.97 | -1.24 | 0.854 | -- | -- | -- | -3.23 | 20.4 | -- | -- | -- | -- |
| 156.95 | 0.583 | 6 | -1.59 | -- | 1.36 | -- | -- | -3.48 | -- | 18.9 | 586 | -- | -- |
| 191.65 | 0.645 | 5.96 | -- | 0.82 | 0.68 | -- | -- | -3.19 | 21.5 | 21.7 | 99 | -- | -- |
| 199.92 | 0.661 | 5.95 | -1.25 | -- | -- | -- | -- | -3.24 | -- | -- | -- | -- | -- |
| 199.89 | 0.661 | 5.94 | -- | 0.86 | -- | -- | -- | -3.09 | 20.3 | -- | -- | -- | -- |
| 216.92 | 0.686 | 5.93 | -- | -- | 0.897 | -- | -- | -3.17 | -- | 24.3 | 519 | -- | -- |
| 240.84 | 0.724 | 5.91 | -- | -- | -- | -- | -- | -3.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.38 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 6 | 125.89 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 14 | 127.32 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 23 | 127.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 25 | 128.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 28 | 128.17 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 34 | 128.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 35 | 128.45 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 42 | 128.71 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 54 | 128.99 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 64 | 129.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 68 | 129.38 | temperature | 20.0 | 30 | > th | dose dependent | no | NA | NA |
| 78 | 129.54 | temperature | 10.0 | 30 | > th | dose dependent | no | NA | NA |
| 90 | 129.70 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 95 | 129.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 101 | 129.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 104 | 129.86 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 105 | 129.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 107 | 129.94 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 132 | 130.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 153 | 130.39 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 170 | 130.55 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 171 | 130.57 | temperature | 10.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 187 | 130.81 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 203 | 130.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 241 | 131.24 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 246 | 131.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 249 | 131.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 266 | 131.36 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 272 | 131.39 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 274 | 131.43 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 283 | 131.45 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 284 | 131.46 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 305 | 131.62 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 322 | 131.69 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 327 | 131.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 366 | 131.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 370 | 131.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 383 | 132.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 386 | 132.02 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 394 | 132.05 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 402 | 132.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 425 | 132.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 435 | 132.29 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 439 | 132.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 460 | 132.38 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 490 | 132.51 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 493 | 132.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 15 |
| 527 | 132.62 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 536 | 132.62 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 550 | 132.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 555 | 132.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 556 | 132.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 560 | 132.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 566 | 132.68 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 589 | 132.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 662 | 132.84 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 776 | 133.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 803 | 133.13 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 843 | 133.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 844 | 133.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 876 | 133.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 924 | 133.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |