Os06g0164600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0164600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.67 | 0.474 | 5.94 | -1.12 | 0.981 | -0.263 | 0.626 | 4.33 | -0.0785 | 2.61 | 20.64 | 1289 | -- | -- |
| 108.58 | 0.489 | 5.88 | -0.805 | 1.13 | -1.61 | 0.153 | -- | -0.0199 | 2.46 | 20.64 | 1289 | -- | -- |
| 102.7 | 0.472 | 5.94 | -1.11 | 0.998 | -0.3 | -- | 4.33 | -0.08 | 2.56 | 20.46 | 1426 | -- | -- |
| 105.68 | 0.479 | 5.88 | -1.07 | 0.97 | -1.74 | -- | -- | -0.0506 | 2.61 | 17.94 | 4731 | -- | -- |
| 157.39 | 0.584 | 5.92 | -1.1 | -- | -0.853 | -- | 2.96 | -0.0792 | -- | 21.12 | 1083 | -- | -- |
| 127.58 | 0.53 | 5.85 | -0.54 | 1.01 | -- | 0.252 | -- | 0.1 | 2.63 | -- | -- | -- | -- |
| 127.8 | 0.529 | 5.85 | -0.546 | 1.01 | -- | -- | -- | 0.0987 | 2.63 | -- | -- | -- | -- |
| 162.16 | 0.593 | 5.88 | -0.898 | -- | -1.68 | -- | -- | -0.0265 | -- | 18.46 | 2558 | -- | -- |
| 123.53 | 0.518 | 5.84 | -- | 0.999 | -1.87 | -- | -- | 0.122 | 2.56 | 14.86 | 1985 | -- | -- |
| 187.22 | 0.639 | 5.84 | -0.503 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 135.67 | 0.545 | 5.83 | -- | 0.998 | -- | -- | -- | 0.16 | 2.63 | -- | -- | -- | -- |
| 181.63 | 0.628 | 5.85 | -- | -- | -1.68 | -- | -- | 0.134 | -- | 14.8 | 2076 | -- | -- |
| 193.9 | 0.65 | 5.83 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.17 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 10 |
| 5 | 100.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 6 | 100.38 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 7 | 100.39 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 15 | 100.52 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 18 | 100.55 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 10 |
| 33 | 100.78 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 40 | 100.91 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 62 | 101.04 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 86 | 101.15 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 21 |
| 96 | 101.18 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 109 | 101.26 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 166 | 101.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 225 | 101.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 242 | 101.72 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 386 | 102.10 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 395 | 102.13 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 397 | 102.13 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 3 | NA |
| 423 | 102.18 | temperature | 20.0 | 1440 | < th | dose dependent | no | NA | NA |
| 455 | 102.23 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 477 | 102.27 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 481 | 102.28 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 562 | 102.44 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 721 | 102.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 730 | 102.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 17 |
| 741 | 102.78 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 823 | 102.89 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 858 | 102.95 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 865 | 102.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 867 | 102.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 886 | 103.00 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 5 |