Os06g0164500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0164500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.43 | 0.371 | 11.3 | -0.186 | 0.564 | 1.18 | -0.627 | -1.22 | -0.142 | 11 | 30.83 | 89 | -- | -- |
| 64 | 0.373 | 11.4 | -0.342 | 0.567 | 1.23 | -0.485 | -- | -0.133 | 11.1 | 29.7 | 89 | -- | -- |
| 63.93 | 0.372 | 11.4 | -0.259 | 0.571 | 1.24 | -- | -0.932 | -0.159 | 11.1 | 30.94 | 89 | -- | -- |
| 64.35 | 0.374 | 11.4 | -0.405 | 0.588 | 1.17 | -- | -- | -0.182 | 11 | 29.7 | 86 | -- | -- |
| 68.67 | 0.386 | 11.3 | 0.0455 | -- | 1.25 | -- | -2.48 | -0.108 | -- | 90.23 | 666 | -- | -- |
| 81.82 | 0.424 | 11.4 | -0.681 | 0.497 | -- | -0.355 | -- | -0.411 | 8.4 | -- | -- | -- | -- |
| 82.21 | 0.425 | 11.4 | -0.692 | 0.499 | -- | -- | -- | -0.411 | 8.3 | -- | -- | -- | -- |
| 72.84 | 0.397 | 11.4 | -0.378 | -- | 1.17 | -- | -- | -0.174 | -- | 29.66 | 642 | -- | -- |
| 68.24 | 0.385 | 11.4 | -- | 0.611 | 1.33 | -- | -- | -0.111 | 11.4 | 29.71 | 89 | -- | -- |
| 95.98 | 0.458 | 11.4 | -0.689 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 94.84 | 0.456 | 11.4 | -- | 0.495 | -- | -- | -- | -0.334 | 8.4 | -- | -- | -- | -- |
| 76.16 | 0.406 | 11.4 | -- | -- | 1.31 | -- | -- | -0.104 | -- | 29.31 | 676 | -- | -- |
| 108.51 | 0.486 | 11.4 | -- | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 3 | 61.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 11 | 62.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 62.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 23 | 62.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 28 | 62.22 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 29 | 62.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 30 | 62.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 34 | 62.33 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 35 | 62.34 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 37 | 62.36 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 56 | 62.46 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 67 | 62.50 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 82 | 62.60 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 84 | 62.63 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 86 | 62.65 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 94 | 62.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 97 | 62.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 101 | 62.69 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 103 | 62.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 107 | 62.72 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 117 | 62.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 124 | 62.78 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 127 | 62.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 130 | 62.79 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 132 | 62.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 133 | 62.80 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 134 | 62.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 148 | 62.86 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 170 | 62.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 172 | 62.89 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 176 | 62.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 178 | 62.90 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 197 | 62.93 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 200 | 62.94 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 219 | 62.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 225 | 62.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 226 | 62.99 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 234 | 63.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 239 | 63.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 251 | 63.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 265 | 63.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 274 | 63.09 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 286 | 63.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 327 | 63.22 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 349 | 63.25 | radiation | 1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 373 | 63.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 382 | 63.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 393 | 63.32 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 442 | 63.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 456 | 63.37 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 467 | 63.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 514 | 63.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 517 | 63.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 545 | 63.47 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 568 | 63.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 575 | 63.50 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 597 | 63.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 604 | 63.52 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 614 | 63.53 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 655 | 63.54 | radiation | 10 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 663 | 63.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 668 | 63.56 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 710 | 63.58 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 714 | 63.58 | radiation | 30 | 43200 | < th | dose dependent | sin | 7 | NA |
| 731 | 63.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 771 | 63.63 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 838 | 63.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 858 | 63.67 | radiation | 20 | 43200 | < th | dose independent | sin | 5 | NA |
| 864 | 63.67 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 884 | 63.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 894 | 63.69 | radiation | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 909 | 63.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 945 | 63.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 949 | 63.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 963 | 63.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 10 |
| 972 | 63.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 11 |