Os06g0164100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16).
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Os06g0164100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.94 | 0.278 | 10.1 | 0.251 | 1.72 | 0.911 | 0.182 | 0.801 | -0.00373 | 14.1 | 20.5 | 1351 | -- | -- |
| 36.26 | 0.28 | 10.2 | 0.116 | 1.71 | 0.836 | 0.0471 | -- | -0.0382 | 14.1 | 20.7 | 1350 | -- | -- |
| 34.98 | 0.275 | 10.1 | 0.26 | 1.72 | 0.898 | -- | 0.775 | 0.00144 | 14.1 | 20.6 | 1350 | -- | -- |
| 36.17 | 0.28 | 10.2 | 0.119 | 1.73 | 0.781 | -- | -- | -0.0374 | 14.1 | 20.7 | 1302 | -- | -- |
| 171.51 | 0.613 | 10.2 | 0.206 | -- | 0.906 | -- | 0.348 | -0.102 | -- | 21.7 | 13 | -- | -- |
| 50.89 | 0.334 | 10.1 | 0.438 | 1.68 | -- | 0.192 | -- | 0.148 | 14.1 | -- | -- | -- | -- |
| 51.03 | 0.335 | 10.1 | 0.443 | 1.68 | -- | -- | -- | 0.15 | 14.1 | -- | -- | -- | -- |
| 119.42 | 0.509 | 10.2 | 0.132 | -- | 0.996 | -- | -- | -0.186 | -- | 25.82 | 14 | -- | -- |
| 36.47 | 0.281 | 10.2 | -- | 1.73 | 0.827 | -- | -- | -0.0602 | 14.1 | 20.8 | 1304 | -- | -- |
| 220.36 | 0.694 | 10.1 | 0.373 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 56.21 | 0.351 | 10.1 | -- | 1.67 | -- | -- | -- | 0.1 | 14.1 | -- | -- | -- | -- |
| 119.87 | 0.51 | 10.2 | -- | -- | 1 | -- | -- | -0.203 | -- | 25.82 | 14 | -- | -- |
| 224.03 | 0.699 | 10.1 | -- | -- | -- | -- | -- | 0.0681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 8 | 33.98 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 19 |
| 20 | 34.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 30 | 35.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 36 | 35.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 62 | 35.21 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 71 | 35.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 75 | 35.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 97 | 35.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 123 | 35.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 157 | 35.34 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 198 | 35.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 202 | 35.40 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 207 | 35.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 224 | 35.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 228 | 35.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 262 | 35.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 321 | 35.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 327 | 35.59 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 371 | 35.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 431 | 35.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 440 | 35.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 489 | 36.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 553 | 36.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 583 | 36.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 675 | 36.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 712 | 36.54 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 729 | 36.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 730 | 36.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 741 | 36.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 743 | 36.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 748 | 36.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 754 | 36.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 763 | 36.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 771 | 36.63 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 789 | 36.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 814 | 36.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 826 | 36.72 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 883 | 36.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 893 | 36.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 899 | 36.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 904 | 36.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 908 | 36.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 918 | 36.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 928 | 36.87 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 954 | 36.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 964 | 36.91 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |