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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0163900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0466) R2 : 0.71
β1 : -0.971 (0.171) R2dD : 0.0213 R2D : 0.0324
β2 : 4 (0.125) R2dC : 0.734 R2C : 0.561
β3 : -1.78 (0.155) R2dE : 0.0961 R2E : -0.0688
β4 : -2.84 (0.503) R2dD*C : 0.0212 R2D*C : 0.0235
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0173 (0.0999) R2dN8 : 5e-05 R2N8 : -0.000383
σ : 0.872
deviance : 350.21
__
_____
C
peak time of C : 15.6
E
wheather : radiation
threshold : 0.009989
memory length : 304
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.35
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.67 0.88 5.55 -0.966 3.97 -1.78 -2.95 0.184 0.0291 15.6 1.315e-05 302 5.19 --
350.21 0.872 5.56 -0.971 4 -1.78 -2.84 -- 0.0173 15.6 0.009989 304 5.35 --
373.44 0.9 5.54 -1.04 3.9 -1.77 -- -0.945 0.0329 15.6 0.001628 304 5.41 --
375.55 0.903 5.56 -1.01 4.01 -1.81 -- -- 0.0316 15.7 0.0007521 306 5.47 --
441.78 0.979 5.57 -0.84 -- -3.74 -- 0.702 -0.0538 -- -0.0001242 466 5.48 --
416.18 0.956 5.59 -1.11 3.67 -- -3.6 -- -0.0632 16.4 -- -- -- --
451.45 0.995 5.6 -1.14 3.65 -- -- -- -0.0824 16.4 -- -- -- --
451.45 0.99 5.56 -1.14 -- -3.64 -- -- -0.0824 -- -1.632 466 5.48 --
402.07 0.934 5.56 -- 4.06 -1.87 -- -- 0.123 15.7 6.201e-07 305 5.52 --
1165.88 1.6 5.58 -1.29 -- -- -- -- -0.179 -- -- -- -- --
485.79 1.03 5.57 -- 3.67 -- -- -- 0.0447 16.4 -- -- -- --
485.79 1.03 5.53 -- -- -3.66 -- -- 0.0444 -- -3.212 483 5.63 --
1209.44 1.62 5.55 -- -- -- -- -- -0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 339.07 temperature 20.0 270 > th dose independent rect. 10 5
2 341.27 temperature 10.0 270 > th dose dependent rect. 16 17
3 341.81 temperature 20.0 270 > th dose independent rect. 9 7
5 342.30 atmosphere 1010.0 270 < th dose independent rect. 15 7
6 342.47 temperature 10.0 270 > th dose dependent rect. 15 8
10 344.69 temperature 15.0 30 > th dose dependent rect. 18 16
11 344.92 humidity 90.0 270 < th dose independent rect. 10 5
17 345.91 wind 1.0 270 > th dose independent rect. 14 9
20 346.41 temperature 15.0 270 > th dose independent rect. 15 19
25 346.79 wind 9.0 270 < th dose independent rect. 15 18
26 346.82 temperature 15.0 270 > th dose independent rect. 16 17
30 347.16 temperature 15.0 270 > th dose independent rect. 15 7
35 347.71 temperature 15.0 270 > th dose independent rect. 14 9
41 348.47 precipitation 0.1 270 < th dose independent rect. 9 7
42 348.47 precipitation 0.1 270 < th dose dependent rect. 9 7
43 348.92 temperature 10.0 270 > th dose independent rect. 9 7
44 348.92 atmosphere 1015.0 270 < th dose independent rect. 9 7
53 349.25 atmosphere 1015.0 270 < th dose independent rect. 15 19
64 349.65 humidity 60.0 270 > th dose independent rect. 3 7
65 349.90 wind 9.0 270 < th dose independent rect. 14 9
67 350.00 wind 9.0 270 < th dose independent rect. 5 15
69 350.30 wind 9.0 270 < th dose independent rect. 15 7
70 350.32 atmosphere 1015.0 270 < th dose independent rect. 16 17
72 350.37 precipitation 0.1 270 < th dose independent rect. 16 17
73 350.37 precipitation 0.1 270 < th dose dependent rect. 16 17
75 350.41 wind 1.0 270 > th dose independent rect. 15 7
77 350.45 atmosphere 995.0 270 > th dose independent rect. 10 5
80 350.53 wind 9.0 270 < th dose independent rect. 9 6
81 350.62 radiation 40.0 270 < th dose independent rect. 16 17
82 350.73 atmosphere 995.0 270 > th dose independent rect. 16 17
89 351.01 temperature 10.0 270 > th dose independent rect. 3 7
90 351.01 atmosphere 995.0 270 > th dose independent rect. 3 7
91 351.01 atmosphere 1015.0 270 < th dose independent rect. 3 7
92 351.01 temperature 10.0 270 > th dose independent rect. 10 17
96 351.21 precipitation 0.1 270 < th dose independent rect. 10 17
97 351.21 precipitation 0.1 270 < th dose dependent rect. 10 17
98 351.22 wind 9.0 270 < th dose independent rect. 3 7
106 351.90 precipitation 0.1 270 < th dose independent rect. 3 7
107 351.90 precipitation 0.1 270 < th dose dependent rect. 3 7
108 352.08 precipitation 0.1 270 < th dose independent rect. 23 15
109 352.08 precipitation 0.1 270 < th dose dependent rect. 23 15
111 352.17 precipitation 0.1 270 < th dose independent rect. 22 17
112 352.17 precipitation 0.1 270 < th dose dependent rect. 22 17
116 352.34 temperature 10.0 270 > th dose independent rect. 22 17
120 352.41 temperature 10.0 270 > th dose independent rect. 23 15
121 352.41 atmosphere 995.0 270 > th dose independent rect. 23 15
122 352.46 radiation 40.0 270 < th dose independent rect. 15 7
125 352.56 radiation 1.0 270 < th dose dependent rect. 20 9
132 352.85 atmosphere 1015.0 270 < th dose independent rect. 4 17
135 352.86 wind 7.0 270 < th dose independent rect. 20 9
140 352.93 radiation 1.0 270 < th dose independent rect. 20 9
143 352.94 radiation 1.0 270 > th dose independent rect. 10 5
146 353.07 wind 9.0 270 < th dose independent rect. 4 17
149 353.18 temperature 10.0 270 > th dose independent rect. 20 9
150 353.18 temperature 30.0 270 < th dose independent rect. 20 9
151 353.18 humidity 50.0 270 > th dose independent rect. 20 9
154 353.18 atmosphere 995.0 270 > th dose independent rect. 20 9
158 353.18 temperature 10.0 270 > th dose independent rect. 5 15
159 353.18 atmosphere 1015.0 270 < th dose independent rect. 5 15
160 353.22 atmosphere 995.0 270 > th dose independent rect. 22 17
161 353.23 wind 1.0 270 > th dose independent rect. 9 7
164 353.27 precipitation 0.1 270 < th dose independent rect. 15 7
165 353.27 precipitation 0.1 270 < th dose dependent rect. 15 7
166 353.36 temperature 20.0 10 > th dose independent rect. 10 8
168 353.42 humidity 50.0 270 > th dose independent rect. 9 7
177 353.85 wind 9.0 270 < th dose independent rect. 22 17
180 354.00 wind 9.0 270 < th dose independent rect. 23 15
186 354.09 precipitation 0.1 270 < th dose independent rect. 20 9
187 354.09 precipitation 0.1 270 < th dose dependent rect. 20 9
194 354.26 temperature 30.0 270 < th dose independent rect. 10 5
198 354.60 radiation 1.0 270 < th dose dependent rect. 20 11
199 354.74 wind 7.0 270 < th dose independent rect. 21 7
203 354.89 precipitation 0.1 270 < th dose independent rect. 14 9
204 354.89 precipitation 0.1 270 < th dose dependent rect. 14 9
217 355.14 radiation 1.0 270 < th dose dependent sin 11 NA
227 355.53 atmosphere 995.0 270 > th dose independent rect. 15 7
228 355.55 temperature 10.0 270 > th dose independent rect. 21 7
229 355.55 temperature 30.0 270 < th dose independent rect. 21 7
230 355.55 humidity 50.0 270 > th dose independent rect. 21 7
233 355.55 atmosphere 995.0 270 > th dose independent rect. 21 7
234 355.55 radiation 1.0 270 < th dose independent rect. 21 7
239 355.55 temperature 10.0 270 > th dose independent rect. 4 17
240 355.55 radiation 1.0 270 < th dose dependent rect. 21 7
249 355.72 wind 9.0 270 < th dose independent rect. 10 17
256 355.91 humidity 50.0 270 > th dose independent rect. 10 17
264 356.08 precipitation 0.1 270 < th dose independent rect. 21 7
265 356.08 precipitation 0.1 270 < th dose dependent rect. 21 7
266 356.14 precipitation 0.1 270 < th dose independent rect. 5 15
267 356.14 precipitation 0.1 270 < th dose dependent rect. 5 15
305 356.98 temperature 25.0 30 > th dose independent rect. 18 17
346 357.62 atmosphere 995.0 270 > th dose independent rect. 10 17
350 357.75 temperature 10.0 270 > th dose dependent rect. 10 5
357 357.92 radiation 1.0 270 > th dose independent rect. 16 17
360 357.98 precipitation 0.1 270 < th dose independent rect. 4 17
361 357.98 precipitation 0.1 270 < th dose dependent rect. 4 17
367 358.05 precipitation 0.1 270 < th dose independent rect. 9 19
368 358.05 precipitation 0.1 270 < th dose dependent rect. 9 19
382 358.25 radiation 1.0 270 < th dose dependent rect. 20 18
383 358.33 wind 9.0 270 < th dose independent rect. 4 5
384 358.33 temperature 10.0 270 > th dose independent rect. 4 5
387 358.33 atmosphere 995.0 270 > th dose independent rect. 4 5
388 358.33 atmosphere 1015.0 270 < th dose independent rect. 4 5
389 358.33 temperature 10.0 270 > th dose independent rect. 9 19
397 358.48 temperature 15.0 10 > th dose independent rect. 18 16
399 358.50 precipitation 0.1 270 < th dose independent rect. 4 5
400 358.50 precipitation 0.1 270 < th dose dependent rect. 4 5
408 358.73 humidity 50.0 270 > th dose independent rect. 22 17
412 358.85 humidity 50.0 270 > th dose independent rect. 23 15
413 358.89 temperature 15.0 10 > th dose dependent rect. 18 6
424 359.03 atmosphere 995.0 270 > th dose dependent rect. 21 7
456 359.40 radiation 1.0 270 > th dose independent sin 11 NA
457 359.40 temperature 30.0 270 < th dose dependent rect. 21 7
478 359.60 temperature 10.0 270 > th dose dependent rect. 4 5
481 359.64 radiation 1.0 270 < th dose independent sin 11 NA
494 359.72 atmosphere 1015.0 270 < th dose independent rect. 23 15
511 359.98 temperature 30.0 270 < th dose independent rect. 22 17
521 360.27 atmosphere 995.0 270 > th dose independent rect. 5 15
523 360.34 temperature 30.0 270 < th dose independent rect. 4 5
525 360.40 temperature 20.0 10 > th dose independent rect. 18 6
531 360.54 temperature 30.0 270 < th dose independent rect. 3 7
534 360.60 atmosphere 995.0 270 > th dose independent rect. 4 17
542 360.71 radiation 40.0 270 < th dose independent rect. 4 5
543 360.73 wind 1.0 270 > th dose independent rect. 15 18
548 360.94 humidity 50.0 90 > th dose independent rect. 17 18
561 361.25 atmosphere 1015.0 10 < th dose independent rect. 18 16
564 361.30 wind 1.0 90 > th dose independent rect. 17 6
573 361.38 humidity 50.0 270 > th dose dependent rect. 21 7
574 361.38 wind 9.0 270 < th dose dependent rect. 20 8
578 361.48 radiation 40.0 270 < th dose independent rect. 3 7
597 361.73 temperature 30.0 90 < th dose dependent rect. 23 6
619 362.02 humidity 50.0 270 > th dose independent rect. 17 16
622 362.04 wind 9.0 270 < th dose independent rect. 9 19
637 362.21 temperature 15.0 90 > th dose independent rect. 17 6
690 362.80 radiation 40.0 90 < th dose dependent rect. 15 8
693 362.84 temperature 10.0 10 > th dose dependent rect. 16 20
722 363.31 precipitation 0.1 10 < th dose independent rect. 10 8
724 363.31 precipitation 0.1 10 < th dose dependent rect. 10 8
737 363.47 atmosphere 995.0 10 > th dose independent rect. 18 16
740 363.59 temperature 10.0 10 > th dose independent rect. 10 8
742 363.59 atmosphere 1015.0 10 < th dose independent rect. 10 8
744 363.59 humidity 50.0 10 > th dose independent rect. 18 16
746 363.63 atmosphere 995.0 270 > th dose independent rect. 9 19
758 363.79 wind 9.0 10 < th dose independent rect. 18 16
759 363.80 atmosphere 995.0 90 > th dose independent rect. 17 6
770 363.97 wind 1.0 270 > th dose dependent rect. 11 3
794 364.21 radiation 10.0 90 < th dose dependent rect. 23 8
860 364.81 radiation 20.0 90 < th dose independent rect. 17 6
871 364.89 radiation 1.0 90 < th dose dependent rect. 23 16
894 365.06 humidity 50.0 270 > th dose dependent rect. 4 6
909 365.20 radiation 1.0 270 < th dose independent rect. 20 18
923 365.36 temperature 20.0 10 > th dose independent rect. 12 4
925 365.40 wind 9.0 270 < th dose dependent rect. 15 6
934 365.43 wind 1.0 270 > th dose dependent rect. 10 5
939 365.48 humidity 50.0 10 > th dose independent rect. 10 8
944 365.55 wind 9.0 30 < th dose independent rect. 10 8
958 365.68 wind 1.0 90 > th dose independent rect. 6 17
986 365.91 temperature 25.0 30 > th dose dependent sin 10 NA