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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0163800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0513) R2 : 0.742
β1 : -2 (0.188) R2dD : 0.0669 R2D : 0.0625
β2 : 2.53 (0.168) R2dC : 0.204 R2C : 0.457
β3 : 2.53 (0.163) R2dE : 0.216 R2E : 0.455
β4 : -3.09 (0.615) R2dD*C : 0.0141 R2D*C : 0.00556
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.109) R2dN8 : 0.00127 R2N8 : 0.00178
σ : 0.958
deviance : 422.91
__
_____
C
peak time of C : 17.7
E
wheather : temperature
threshold : 19.97
memory length : 272
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.13
open length of G : 6.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.62 0.962 5.74 -2.02 2.45 2.61 -2.21 -1.28 0.135 17.9 19.9 273 9.07 6.88
422.91 0.958 5.73 -2 2.53 2.53 -3.09 -- 0.142 17.7 19.97 272 9.13 6.73
427.41 0.963 5.75 -1.97 2.39 2.95 -- -2.56 0.109 18 19.8 310 9 6.37
444.51 0.982 5.75 -1.98 2.4 2.94 -- -- 0.121 18.1 19.76 310 9 6.33
497.66 1.04 5.69 -1.78 -- 4.17 -- -2.61 0.103 -- 10.13 591 7.75 7.26
518.92 1.07 5.74 -1.74 4.33 -- -2.88 -- 0.157 16.5 -- -- -- --
541.35 1.09 5.74 -1.76 4.31 -- -- -- 0.141 16.5 -- -- -- --
516.86 1.06 5.7 -1.81 -- 4.18 -- -- 0.111 -- 10.31 589 7.75 7.27
540.81 1.08 5.7 -- 2.56 2.62 -- -- 0.385 18.1 17.3 273 9.06 6.6
1538.15 1.83 5.71 -1.93 -- -- -- -- 0.0275 -- -- -- -- --
622.96 1.17 5.7 -- 4.35 -- -- -- 0.337 16.4 -- -- -- --
603.06 1.14 5.65 -- -- 4.19 -- -- 0.294 -- 11.35 591 7.7 7.32
1636.25 1.89 5.67 -- -- -- -- -- 0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.73 temperature 20.0 270 > th dose independent rect. 9 7
2 423.14 temperature 20.0 270 > th dose independent rect. 10 5
4 429.10 humidity 90.0 270 < th dose independent rect. 10 5
7 431.48 humidity 90.0 270 < th dose independent rect. 9 7
9 432.16 temperature 20.0 10 > th dose independent rect. 10 8
10 432.41 atmosphere 1010.0 270 < th dose independent rect. 10 5
18 435.02 wind 9.0 270 < th dose independent rect. 16 17
23 436.35 precipitation 0.1 270 < th dose independent rect. 9 7
24 436.35 precipitation 0.1 270 < th dose dependent rect. 9 7
25 436.46 temperature 15.0 270 > th dose independent rect. 16 17
31 437.76 radiation 40.0 270 < th dose independent rect. 16 17
32 437.80 atmosphere 995.0 270 > th dose independent rect. 16 17
33 438.15 precipitation 0.1 270 < th dose independent rect. 16 17
34 438.15 precipitation 0.1 270 < th dose dependent rect. 16 17
35 438.31 temperature 30.0 270 < th dose independent rect. 10 5
37 438.60 atmosphere 1010.0 270 < th dose independent rect. 15 7
38 438.61 temperature 15.0 270 > th dose independent rect. 15 19
40 438.74 precipitation 0.1 270 < th dose independent rect. 10 5
41 438.74 precipitation 0.1 270 < th dose dependent rect. 10 5
42 438.83 wind 9.0 270 < th dose independent rect. 9 7
48 439.50 wind 9.0 270 < th dose independent rect. 5 15
52 439.95 radiation 1.0 270 > th dose independent rect. 9 7
56 440.16 wind 9.0 270 < th dose independent rect. 10 5
62 440.78 atmosphere 995.0 270 > th dose independent rect. 10 5
64 440.86 atmosphere 995.0 270 > th dose independent rect. 15 19
66 441.00 precipitation 0.1 270 < th dose independent rect. 15 19
67 441.00 precipitation 0.1 270 < th dose dependent rect. 15 19
68 441.11 atmosphere 1015.0 270 < th dose independent rect. 16 17
74 441.57 atmosphere 995.0 270 > th dose independent rect. 9 7
75 441.60 humidity 50.0 270 > th dose independent rect. 9 7
76 441.78 wind 7.0 270 < th dose independent rect. 20 9
77 441.80 atmosphere 1015.0 270 < th dose independent rect. 15 19
80 442.00 radiation 1.0 270 < th dose dependent rect. 20 9
82 442.06 radiation 1.0 270 < th dose independent rect. 20 9
90 442.51 temperature 10.0 270 > th dose independent rect. 20 9
91 442.51 temperature 30.0 270 < th dose independent rect. 20 9
92 442.51 humidity 50.0 270 > th dose independent rect. 20 9
95 442.51 atmosphere 995.0 270 > th dose independent rect. 20 9
99 442.51 temperature 10.0 270 > th dose independent rect. 5 15
100 442.51 atmosphere 1015.0 270 < th dose independent rect. 5 15
101 442.52 temperature 10.0 30 > th dose dependent rect. 18 16
105 443.07 precipitation 0.1 270 < th dose independent rect. 20 9
106 443.07 precipitation 0.1 270 < th dose dependent rect. 20 9
110 443.54 humidity 90.0 30 < th dose independent rect. 10 8
115 443.98 wind 1.0 270 > th dose independent rect. 14 9
121 444.59 precipitation 0.1 270 < th dose independent rect. 3 7
122 444.59 precipitation 0.1 270 < th dose dependent rect. 3 7
123 444.70 humidity 60.0 270 > th dose independent rect. 3 7
124 444.71 precipitation 0.1 270 < th dose independent rect. 10 17
125 444.71 precipitation 0.1 270 < th dose dependent rect. 10 17
126 444.77 precipitation 0.1 270 < th dose independent rect. 5 15
127 444.77 precipitation 0.1 270 < th dose dependent rect. 5 15
128 444.81 temperature 10.0 270 > th dose independent rect. 3 7
130 444.81 atmosphere 995.0 270 > th dose independent rect. 3 7
131 444.81 atmosphere 1015.0 270 < th dose independent rect. 3 7
132 444.81 temperature 10.0 270 > th dose independent rect. 10 17
133 444.82 temperature 15.0 270 > th dose independent rect. 15 7
138 445.18 humidity 50.0 270 > th dose independent rect. 10 5
139 445.20 wind 9.0 270 < th dose independent rect. 3 7
144 445.47 atmosphere 1010.0 270 < th dose independent rect. 11 2
151 445.96 temperature 15.0 10 > th dose independent rect. 18 16
173 446.94 wind 9.0 270 < th dose independent rect. 15 7
175 447.16 wind 1.0 270 > th dose independent rect. 9 7
177 447.32 temperature 15.0 270 > th dose independent rect. 14 9
183 447.52 atmosphere 1010.0 10 < th dose independent rect. 10 8
186 447.71 radiation 1.0 270 > th dose independent rect. 17 15
188 447.75 radiation 40.0 270 < th dose independent rect. 10 5
195 448.05 radiation 1.0 270 > th dose independent rect. 16 17
201 448.19 wind 1.0 270 > th dose independent rect. 15 7
225 448.57 wind 1.0 270 > th dose independent rect. 10 5
236 448.65 humidity 50.0 270 > th dose independent rect. 10 18
247 448.75 atmosphere 995.0 270 > th dose independent rect. 5 15
264 449.07 precipitation 0.1 10 < th dose independent rect. 10 8
265 449.07 precipitation 0.1 10 < th dose dependent rect. 10 8
267 449.08 atmosphere 1015.0 30 < th dose independent rect. 18 16
268 449.10 radiation 40.0 270 < th dose independent rect. 15 7
274 449.18 precipitation 0.1 14400 < th dose independent rect. 5 6
275 449.18 precipitation 0.1 14400 < th dose dependent rect. 5 6
278 449.22 temperature 10.0 270 > th dose independent rect. 22 17
292 449.49 wind 9.0 270 < th dose independent rect. 10 17
293 449.50 temperature 10.0 270 > th dose dependent rect. 15 8
303 449.66 humidity 90.0 14400 > th dose dependent rect. 9 2
304 449.66 temperature 10.0 270 > th dose dependent rect. 9 6
305 449.67 radiation 1.0 270 < th dose dependent sin 11 NA
311 449.73 precipitation 0.1 270 < th dose independent rect. 22 17
312 449.73 precipitation 0.1 270 < th dose dependent rect. 22 17
313 449.79 atmosphere 995.0 10 > th dose independent rect. 18 16
315 449.82 radiation 1.0 270 > th dose dependent rect. 16 16
319 449.94 precipitation 0.1 270 < th dose independent rect. 4 5
320 449.94 precipitation 0.1 270 < th dose dependent rect. 4 5
324 450.01 temperature 10.0 10 > th dose independent rect. 10 8
328 450.01 humidity 50.0 10 > th dose independent rect. 18 16
330 450.04 wind 9.0 270 < th dose independent rect. 22 17
331 450.05 precipitation 0.1 14400 < th dose independent rect. 6 3
332 450.05 precipitation 0.1 14400 < th dose dependent rect. 6 3
334 450.06 wind 9.0 10 < th dose independent rect. 18 16
335 450.11 wind 9.0 270 < th dose independent rect. 4 5
336 450.11 temperature 10.0 270 > th dose independent rect. 4 5
339 450.11 atmosphere 995.0 270 > th dose independent rect. 4 5
340 450.11 atmosphere 1015.0 270 < th dose independent rect. 4 5
341 450.11 temperature 10.0 270 > th dose independent rect. 9 19
355 450.19 humidity 50.0 10 > th dose independent rect. 10 8
356 450.19 precipitation 0.1 270 < th dose independent rect. 9 19
357 450.19 precipitation 0.1 270 < th dose dependent rect. 9 19
358 450.21 temperature 30.0 270 < th dose independent rect. 22 17
360 450.32 radiation 1.0 270 > th dose independent sin 11 NA
368 450.47 precipitation 0.1 270 < th dose independent rect. 15 7
369 450.47 precipitation 0.1 270 < th dose dependent rect. 15 7
371 450.53 precipitation 0.1 14400 < th dose independent rect. 4 8
372 450.53 precipitation 0.1 14400 < th dose dependent rect. 4 8
385 450.66 atmosphere 995.0 270 > th dose independent rect. 22 17
392 450.84 precipitation 0.1 14400 > th dose independent rect. 5 5
395 450.91 radiation 1.0 270 < th dose independent sin 11 NA
403 451.13 atmosphere 995.0 270 > th dose independent rect. 15 7
406 451.15 temperature 10.0 270 > th dose independent rect. 23 15
407 451.15 atmosphere 995.0 270 > th dose independent rect. 23 15
412 451.26 wind 1.0 270 > th dose independent rect. 15 18
421 451.39 humidity 50.0 90 > th dose independent rect. 17 18
422 451.44 wind 9.0 30 < th dose independent rect. 10 8
424 451.47 precipitation 0.1 14400 > th dose independent rect. 4 8
436 451.64 precipitation 0.1 14400 > th dose dependent rect. 5 5
439 451.68 precipitation 0.1 14400 > th dose independent rect. 6 3
440 451.68 precipitation 0.1 14400 > th dose dependent rect. 6 3
443 451.76 radiation 40.0 270 < th dose independent rect. 4 5
471 451.98 temperature 25.0 14400 < th dose dependent rect. 8 8
482 452.08 precipitation 0.1 14400 > th dose dependent rect. 4 8
486 452.12 precipitation 0.1 30 < th dose independent rect. 18 16
487 452.12 precipitation 0.1 30 < th dose dependent rect. 18 16
492 452.16 precipitation 0.1 14400 > th dose independent rect. 20 21
509 452.29 precipitation 0.1 14400 < th dose independent rect. 20 21
510 452.29 precipitation 0.1 14400 < th dose dependent rect. 20 21
525 452.39 temperature 25.0 14400 < th dose dependent rect. 12 4
533 452.46 temperature 30.0 270 < th dose independent rect. 4 5
556 452.62 temperature 25.0 14400 < th dose dependent rect. 9 2
557 452.62 atmosphere 995.0 270 > th dose dependent rect. 21 8
571 452.75 temperature 25.0 14400 < th dose dependent rect. 14 1
675 453.51 wind 1.0 30 > th dose dependent rect. 18 16
690 453.69 temperature 10.0 10 > th dose dependent rect. 10 8
700 453.80 wind 9.0 270 < th dose independent rect. 9 19
701 453.80 wind 9.0 270 < th dose dependent rect. 20 8
714 453.88 humidity 90.0 14400 > th dose dependent rect. 9 7
720 453.96 precipitation 0.1 14400 > th dose dependent rect. 20 21
729 454.10 precipitation 0.1 14400 < th dose independent rect. 17 20
730 454.10 precipitation 0.1 14400 < th dose dependent rect. 17 20
751 454.26 wind 1.0 30 > th dose independent rect. 18 16
766 454.46 precipitation 0.1 14400 > th dose independent rect. 17 20
790 454.71 precipitation 0.1 14400 > th dose independent rect. 4 12
791 454.72 humidity 50.0 270 > th dose independent rect. 17 16
793 454.73 precipitation 0.1 14400 < th dose independent rect. 17 23
794 454.73 precipitation 0.1 14400 < th dose dependent rect. 17 23
805 454.85 precipitation 0.1 14400 > th dose independent rect. 17 23
821 455.00 precipitation 0.1 14400 < th dose independent rect. 4 12
822 455.00 precipitation 0.1 14400 < th dose dependent rect. 4 12
823 455.01 humidity 90.0 14400 > th dose independent rect. 9 5
825 455.03 precipitation 0.1 14400 > th dose independent sin 3 NA
832 455.07 precipitation 0.1 14400 < th dose independent sin 3 NA
834 455.07 precipitation 0.1 14400 < th dose dependent sin 3 NA
836 455.09 atmosphere 995.0 270 > th dose independent rect. 10 17
849 455.16 precipitation 0.1 14400 < th dose independent rect. 14 23
850 455.16 precipitation 0.1 14400 < th dose dependent rect. 14 23
856 455.21 precipitation 0.1 14400 > th dose independent rect. 14 23
869 455.27 temperature 25.0 14400 < th dose dependent sin 22 NA
891 455.44 precipitation 0.1 14400 < th dose independent rect. 20 17
894 455.44 precipitation 0.1 14400 < th dose dependent rect. 20 17
901 455.49 humidity 50.0 270 > th dose independent rect. 22 17
968 455.87 precipitation 0.1 14400 > th dose independent rect. 8 22
972 455.89 precipitation 0.1 14400 < th dose independent rect. 8 22
974 455.89 precipitation 0.1 14400 < th dose dependent rect. 8 22
977 455.91 precipitation 0.1 14400 > th dose independent rect. 10 20
981 455.92 radiation 20.0 90 < th dose dependent sin 9 NA
994 456.03 precipitation 0.1 14400 > th dose independent rect. 24 23
999 456.05 precipitation 0.1 14400 < th dose independent rect. 24 23
1000 456.05 precipitation 0.1 14400 < th dose dependent rect. 24 23