Os06g0163000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat shock protein STI (Stress inducible protein) (GmSTI).
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Os06g0163000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat shock protein STI (Stress inducible protein) (GmSTI).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.05 | 0.358 | 10 | 1.23 | 0.792 | -0.482 | 0.925 | -2.21 | 0.438 | 5.09 | 3.058 | 4332 | -- | -- |
| 61.74 | 0.366 | 10.1 | 0.872 | 0.812 | -0.494 | 1.16 | -- | 0.349 | 5.03 | 38.96 | 2921 | -- | -- |
| 60.04 | 0.361 | 10 | 1.21 | 0.8 | -0.443 | -- | -2.08 | 0.431 | 5.17 | 3.656 | 4317 | -- | -- |
| 62.67 | 0.369 | 10.1 | 0.783 | 0.816 | -0.525 | -- | -- | 0.331 | 5.26 | 66.59 | 2857 | -- | -- |
| 93.06 | 0.449 | 10 | 1.22 | -- | -0.491 | -- | -2.16 | 0.441 | -- | 3.672 | 4305 | -- | -- |
| 68.51 | 0.388 | 10 | 0.802 | 0.816 | -- | 0.974 | -- | 0.429 | 5.06 | -- | -- | -- | -- |
| 70.92 | 0.394 | 10.1 | 0.8 | 0.822 | -- | -- | -- | 0.424 | 5.03 | -- | -- | -- | -- |
| 96.83 | 0.458 | 10.1 | 0.816 | -- | -0.55 | -- | -- | 0.351 | -- | 65.12 | 2843 | -- | -- |
| 79.07 | 0.414 | 10.1 | -- | 0.823 | -0.535 | -- | -- | 0.246 | 5.26 | 132 | 2837 | -- | -- |
| 106.39 | 0.482 | 10.1 | 0.83 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 87.8 | 0.438 | 10.1 | -- | 0.836 | -- | -- | -- | 0.335 | 5 | -- | -- | -- | -- |
| 114.32 | 0.498 | 10.1 | -- | -- | -0.558 | -- | -- | 0.255 | -- | 57.35 | 2840 | -- | -- |
| 124.56 | 0.521 | 10.1 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.31 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 52.35 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 31 | 53.68 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 40 | 53.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 48 | 53.95 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 62 | 54.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 63 | 54.10 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 74 | 54.23 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 75 | 54.24 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 77 | 54.25 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 81 | 54.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 83 | 54.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 88 | 54.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 93 | 54.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 94 | 54.34 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 95 | 54.35 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 98 | 54.36 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 99 | 54.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 130 | 54.48 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 188 | 54.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 189 | 54.69 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 197 | 54.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 211 | 54.74 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 220 | 54.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 226 | 54.77 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 230 | 54.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 233 | 54.80 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 245 | 54.82 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 276 | 54.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 278 | 54.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 284 | 54.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 16 |
| 299 | 54.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 302 | 54.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 329 | 54.94 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 8 | 13 |
| 333 | 54.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 335 | 54.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 336 | 54.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 349 | 54.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 350 | 54.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 354 | 54.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 361 | 54.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 378 | 54.98 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 380 | 54.98 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 383 | 54.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 384 | 54.98 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 387 | 54.98 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 397 | 54.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 410 | 54.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 411 | 54.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 502 | 55.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 548 | 55.04 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 15 | 21 |
| 552 | 55.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 565 | 55.05 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 16 | 18 |
| 616 | 55.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 622 | 55.07 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 656 | 55.07 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 661 | 55.08 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 691 | 55.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 692 | 55.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 715 | 55.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 18 |
| 764 | 55.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 774 | 55.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 784 | 55.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 805 | 55.14 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 939 | 55.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 3 |