Os06g0162800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MADS box protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0162800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : MADS box protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.88 | 0.435 | 3.14 | 0.226 | 0.482 | -0.701 | 0.929 | -1.02 | 0.348 | 0.791 | 90 | 2401 | -- | -- |
| 86.73 | 0.434 | 3.13 | 0.316 | 0.488 | -0.782 | 0.766 | -- | 0.357 | 0.697 | 89.27 | 2348 | -- | -- |
| 89.08 | 0.44 | 3.14 | 0.251 | 0.484 | -0.729 | -- | -0.416 | 0.349 | 1.08 | 89.58 | 2373 | -- | -- |
| 89.26 | 0.44 | 3.13 | 0.289 | 0.491 | -0.769 | -- | -- | 0.356 | 1.1 | 89.48 | 2388 | -- | -- |
| 98.41 | 0.462 | 3.12 | 0.194 | -- | -0.615 | -- | -0.943 | 0.387 | -- | 91.79 | 3121 | -- | -- |
| 97.02 | 0.462 | 3.13 | 0.283 | 0.373 | -- | 0.699 | -- | 0.339 | 1.58 | -- | -- | -- | -- |
| 98.82 | 0.466 | 3.14 | 0.259 | 0.38 | -- | -- | -- | 0.334 | 2.11 | -- | -- | -- | -- |
| 97.71 | 0.46 | 3.13 | 0.293 | -- | -0.66 | -- | -- | 0.365 | -- | 94 | 1753 | -- | -- |
| 91.4 | 0.445 | 3.13 | -- | 0.496 | -0.793 | -- | -- | 0.354 | 1.16 | 107.9 | 2409 | -- | -- |
| 107.48 | 0.484 | 3.13 | 0.275 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 100.6 | 0.469 | 3.14 | -- | 0.385 | -- | -- | -- | 0.305 | 2.13 | -- | -- | -- | -- |
| 99.99 | 0.466 | 3.13 | -- | -- | -0.648 | -- | -- | 0.336 | -- | 120.5 | 1754 | -- | -- |
| 109.48 | 0.488 | 3.14 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.82 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 3 | 82.91 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 8 |
| 4 | 83.02 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 83.03 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 6 |
| 8 | 83.05 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 13 |
| 9 | 83.11 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 20 | 83.35 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 8 |
| 23 | 83.44 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 5 |
| 56 | 83.90 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 12 |
| 67 | 84.02 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 69 | 84.05 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 71 | 84.06 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 79 | 84.11 | humidity | 80 | 720 | < th | dose independent | sin | 18 | NA |
| 87 | 84.15 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 90 | 84.19 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 98 | 84.21 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 120 | 84.34 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 172 | 84.62 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 343 | 85.26 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 382 | 85.39 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 452 | 85.58 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 520 | 85.85 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 542 | 85.91 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 552 | 85.92 | wind | 1 | 270 | < th | dose independent | rect. | 17 | 3 |
| 603 | 86.01 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 21 |
| 669 | 86.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 706 | 86.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 732 | 86.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 734 | 86.27 | humidity | 60 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 740 | 86.28 | humidity | 60 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 754 | 86.30 | humidity | 50 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 800 | 86.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 819 | 86.39 | humidity | 90 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 825 | 86.40 | humidity | 90 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 852 | 86.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 976 | 86.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 6 |