Os06g0162700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myb proto-oncogene protein (C-myb).
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Os06g0162700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myb proto-oncogene protein (C-myb).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.58 | 0.533 | 3.97 | -0.176 | 0.286 | 0.302 | -0.465 | 0.178 | -0.102 | 18 | 1006 | 432 | -- | -- |
| 128.74 | 0.528 | 3.97 | -0.176 | 0.284 | 0.305 | -0.472 | -- | -0.103 | 18 | 1006 | 421 | -- | -- |
| 129.03 | 0.529 | 3.97 | -0.171 | 0.29 | 0.307 | -- | 0.189 | -0.108 | 18.4 | 1006 | 411 | -- | -- |
| 129.2 | 0.529 | 3.97 | -0.173 | 0.295 | 0.309 | -- | -- | -0.114 | 18.4 | 1006 | 353 | -- | -- |
| 133.13 | 0.537 | 3.97 | -0.177 | -- | 0.294 | -- | 0.0604 | -0.108 | -- | 1006 | 595 | -- | -- |
| 135.41 | 0.546 | 3.94 | -0.179 | 0.223 | -- | -0.647 | -- | 0.023 | 17.6 | -- | -- | -- | -- |
| 136.36 | 0.547 | 3.94 | -0.177 | 0.223 | -- | -- | -- | 0.0198 | 18.2 | -- | -- | -- | -- |
| 133.12 | 0.537 | 3.96 | -0.177 | -- | 0.293 | -- | -- | -0.108 | -- | 1006 | 632 | -- | -- |
| 130.01 | 0.531 | 3.97 | -- | 0.298 | 0.31 | -- | -- | -0.113 | 18.3 | 1006 | 353 | -- | -- |
| 138.94 | 0.551 | 3.94 | -0.183 | -- | -- | -- | -- | 0.0149 | -- | -- | -- | -- | -- |
| 137.18 | 0.548 | 3.94 | -- | 0.226 | -- | -- | -- | 0.0395 | 18.2 | -- | -- | -- | -- |
| 133.96 | 0.539 | 3.96 | -- | -- | 0.295 | -- | -- | -0.0922 | -- | 1006 | 645 | -- | -- |
| 139.82 | 0.552 | 3.93 | -- | -- | -- | -- | -- | 0.0352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.91 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 3 | 127.13 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 6 | 127.18 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 22 | 5 |
| 15 | 127.52 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 16 | 127.56 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 21 | 127.61 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 34 | 127.77 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 36 | 127.77 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 42 | 127.81 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 10 |
| 61 | 128.00 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 24 | 3 |
| 62 | 128.00 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 5 |
| 91 | 128.18 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 124 | 128.35 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 10 | NA |
| 126 | 128.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 128 | 128.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 145 | 128.39 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 157 | 128.44 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 11 | NA |
| 167 | 128.47 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 3 | 2 |
| 179 | 128.50 | wind | 9.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 188 | 128.52 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 209 | 128.60 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 234 | 128.66 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 241 | 128.68 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 267 | 128.74 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 271 | 128.75 | atmosphere | 1010.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 306 | 128.81 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 15 |
| 312 | 128.82 | atmosphere | 1010.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 313 | 128.82 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 22 | 7 |
| 320 | 128.83 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 366 | 128.90 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 406 | 128.95 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 6 | NA |
| 410 | 128.95 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 441 | 128.99 | wind | 1.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 456 | 129.01 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 482 | 129.04 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 491 | 129.06 | humidity | 60.0 | 30 | > th | dose independent | rect. | 8 | 19 |
| 514 | 129.10 | wind | 1.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 532 | 129.12 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 551 | 129.15 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 555 | 129.16 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 625 | 129.25 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 642 | 129.26 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 710 | 129.34 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 19 |
| 711 | 129.34 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 714 | 129.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 717 | 129.35 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 719 | 129.35 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 720 | 129.35 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 721 | 129.35 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 725 | 129.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 731 | 129.35 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 8 | 19 |
| 752 | 129.38 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 790 | 129.42 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 804 | 129.44 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 23 | 16 |
| 832 | 129.47 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 19 | 21 |
| 848 | 129.49 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 885 | 129.52 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 897 | 129.53 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 914 | 129.55 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 920 | 129.55 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 3 | 5 |
| 924 | 129.56 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 992 | 129.62 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 993 | 129.62 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |