Os06g0162600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11 Mtase).
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Os06g0162600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11 Mtase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.87 | 0.345 | 6.86 | 0.166 | 0.391 | -0.634 | -0.43 | 0.316 | 0.203 | 1.52 | 41.6 | 1239 | -- | -- |
| 54 | 0.342 | 6.86 | 0.149 | 0.39 | -0.629 | -0.391 | -- | 0.204 | 1.55 | 42.36 | 1239 | -- | -- |
| 54.6 | 0.344 | 6.85 | 0.163 | 0.391 | -0.643 | -- | 0.211 | 0.205 | 1.5 | 42.1 | 1239 | -- | -- |
| 54.64 | 0.344 | 6.86 | 0.144 | 0.388 | -0.635 | -- | -- | 0.192 | 1.51 | 42.49 | 1239 | -- | -- |
| 61 | 0.364 | 6.84 | 0.218 | -- | -0.588 | -- | 0.704 | 0.253 | -- | 34.4 | 1866 | -- | -- |
| 64.99 | 0.378 | 6.87 | 0.0957 | 0.305 | -- | -0.483 | -- | 0.116 | 2.12 | -- | -- | -- | -- |
| 65.87 | 0.38 | 6.87 | 0.11 | 0.304 | -- | -- | -- | 0.118 | 2.12 | -- | -- | -- | -- |
| 61.47 | 0.365 | 6.86 | 0.133 | -- | -0.697 | -- | -- | 0.184 | -- | 42.75 | 1874 | -- | -- |
| 55.09 | 0.346 | 6.87 | -- | 0.391 | -0.652 | -- | -- | 0.164 | 1.56 | 44.7 | 1239 | -- | -- |
| 71.4 | 0.395 | 6.87 | 0.123 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 66.18 | 0.381 | 6.88 | -- | 0.306 | -- | -- | -- | 0.106 | 2.13 | -- | -- | -- | -- |
| 61.88 | 0.366 | 6.86 | -- | -- | -0.732 | -- | -- | 0.17 | -- | 44.7 | 1874 | -- | -- |
| 71.8 | 0.396 | 6.87 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.13 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 17 | 54.47 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 18 | 54.57 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 19 | 54.60 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 20 | 54.60 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 23 | 54.63 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 40 | 54.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 43 | 54.76 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 48 | 54.88 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 68 | 55.38 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 70 | 55.40 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 88 | 55.92 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 104 | 55.98 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 105 | 55.98 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 106 | 56.01 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 108 | 56.04 | radiation | 10 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 127 | 56.08 | radiation | 10 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 167 | 56.17 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 205 | 56.22 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 223 | 56.25 | radiation | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 225 | 56.26 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 227 | 56.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 228 | 56.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 231 | 56.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 244 | 56.30 | radiation | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 247 | 56.31 | radiation | 40 | 1440 | > th | dose dependent | sin | 5 | NA |
| 272 | 56.33 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 273 | 56.33 | radiation | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 300 | 56.35 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 325 | 56.37 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 484 | 56.38 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 487 | 56.38 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 530 | 56.41 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 532 | 56.42 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 603 | 56.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 604 | 56.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 654 | 56.51 | radiation | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 687 | 56.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 717 | 56.55 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 743 | 56.60 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 764 | 56.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 838 | 56.64 | radiation | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 928 | 56.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 934 | 56.67 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 23 |