Os06g0162500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Naringenin 3-dioxygenase like protein.
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Os06g0162500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Naringenin 3-dioxygenase like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.58 | 0.363 | 9.92 | -0.548 | 0.315 | -0.971 | -0.234 | -1.52 | -0.106 | 6.1 | 28.26 | 98 | -- | -- |
| 62.23 | 0.37 | 9.95 | -0.79 | 0.292 | -1.13 | -0.443 | -- | -0.133 | 5.3 | 45 | 59 | -- | -- |
| 59.68 | 0.36 | 9.92 | -0.55 | 0.323 | -0.994 | -- | -1.57 | -0.109 | 5.88 | 28.36 | 100 | -- | -- |
| 62.72 | 0.371 | 9.95 | -0.793 | 0.293 | -1.15 | -- | -- | -0.133 | 5.31 | 53.55 | 57 | -- | -- |
| 63.88 | 0.372 | 9.92 | -0.518 | -- | -0.843 | -- | -1.44 | -0.0746 | -- | 27.18 | 69 | -- | -- |
| 75.44 | 0.407 | 9.91 | -0.573 | 0.241 | -- | 0.0375 | -- | 0.0281 | 10.4 | -- | -- | -- | -- |
| 75.44 | 0.407 | 9.91 | -0.572 | 0.241 | -- | -- | -- | 0.028 | 10.3 | -- | -- | -- | -- |
| 66.49 | 0.381 | 9.94 | -0.743 | -- | -0.938 | -- | -- | -0.0965 | -- | 83.67 | 8 | -- | -- |
| 77.78 | 0.413 | 9.92 | -- | 0.221 | -0.769 | -- | -- | 0.000216 | 6.8 | 82 | 16 | -- | -- |
| 78.98 | 0.415 | 9.92 | -0.575 | -- | -- | -- | -- | 0.0274 | -- | -- | -- | -- | -- |
| 84.05 | 0.429 | 9.9 | -- | 0.244 | -- | -- | -- | 0.0917 | 10.5 | -- | -- | -- | -- |
| 80.23 | 0.417 | 9.92 | -- | -- | -0.7 | -- | -- | 0.0116 | -- | 112.1 | 2 | -- | -- |
| 87.71 | 0.437 | 9.9 | -- | -- | -- | -- | -- | 0.0912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 59.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 7 | 59.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 17 | 59.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 23 | 59.87 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 26 | 59.89 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 27 | 59.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 28 | 59.95 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 29 | 59.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 39 | 60.09 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 40 | 60.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 52 | 60.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 53 | 60.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 63 | 60.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 70 | 60.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 71 | 60.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 86 | 60.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 93 | 60.57 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 130 | 60.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 154 | 61.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 160 | 61.10 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 175 | 61.15 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 178 | 61.16 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 184 | 61.17 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 188 | 61.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 222 | 61.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 241 | 61.35 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 243 | 61.36 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 250 | 61.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 251 | 61.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 255 | 61.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 261 | 61.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 283 | 61.44 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 321 | 61.54 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 323 | 61.54 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 326 | 61.56 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 328 | 61.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 335 | 61.58 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 22 |
| 401 | 61.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 418 | 61.76 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 433 | 61.77 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 497 | 61.91 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 18 |
| 530 | 61.97 | temperature | 20 | 720 | > th | dose independent | sin | 22 | NA |
| 581 | 62.03 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 586 | 62.04 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 588 | 62.04 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 23 |
| 595 | 62.05 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 620 | 62.05 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 632 | 62.08 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 633 | 62.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 657 | 62.12 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 658 | 62.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 695 | 62.17 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 714 | 62.18 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 715 | 62.18 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 803 | 62.30 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 866 | 62.39 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 879 | 62.40 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 880 | 62.40 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 887 | 62.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 914 | 62.45 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 923 | 62.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 928 | 62.48 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 935 | 62.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 975 | 62.54 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 992 | 62.56 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 7 | 23 |