Os06g0161300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0161300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.38 | 0.316 | 10.1 | -0.178 | 0.471 | -1.01 | -0.116 | -0.238 | 0.0192 | 15.5 | 27.4 | 62 | -- | -- |
| 45.43 | 0.314 | 10.1 | -0.216 | 0.475 | -0.998 | -0.0344 | -- | 0.00935 | 15.5 | 27.45 | 65 | -- | -- |
| 45.39 | 0.314 | 10.1 | -0.191 | 0.475 | -1 | -- | -0.179 | 0.0155 | 15.5 | 27.32 | 65 | -- | -- |
| 45.43 | 0.314 | 10.1 | -0.22 | 0.475 | -0.999 | -- | -- | 0.00913 | 15.5 | 27.41 | 65 | -- | -- |
| 53.51 | 0.341 | 10.1 | -0.286 | -- | -1.34 | -- | -0.0493 | -0.0376 | -- | 29.46 | 90 | -- | -- |
| 59.4 | 0.361 | 10 | 0.0283 | 0.756 | -- | -0.00158 | -- | 0.228 | 15.1 | -- | -- | -- | -- |
| 59.4 | 0.361 | 10 | 0.0283 | 0.756 | -- | -- | -- | 0.228 | 15.1 | -- | -- | -- | -- |
| 53.26 | 0.34 | 10.1 | -0.315 | -- | -1.4 | -- | -- | -0.0692 | -- | 29.5 | 67 | -- | -- |
| 46.57 | 0.318 | 10.1 | -- | 0.509 | -0.909 | -- | -- | 0.0492 | 15.5 | 27.33 | 63 | -- | -- |
| 91.91 | 0.448 | 10 | -0.00388 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 59.42 | 0.361 | 10 | -- | 0.755 | -- | -- | -- | 0.225 | 15.1 | -- | -- | -- | -- |
| 55.88 | 0.348 | 10.1 | -- | -- | -1.3 | -- | -- | -0.00769 | -- | 29.6 | 58 | -- | -- |
| 91.91 | 0.447 | 10 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 5 | 39.98 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 6 | 40.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 8 | 40.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 17 | 40.93 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 29 | 41.55 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 30 | 41.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 36 | 41.72 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 37 | 41.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 39 | 41.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 41 | 41.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 49 | 41.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 58 | 42.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 92 | 42.63 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 14 |
| 150 | 43.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 165 | 43.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 226 | 43.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 298 | 44.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 318 | 44.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 330 | 44.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 337 | 44.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 339 | 44.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 355 | 44.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 360 | 44.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 383 | 44.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 411 | 45.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 422 | 45.15 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 21 |
| 449 | 45.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 473 | 45.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 475 | 45.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 478 | 45.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 506 | 45.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 522 | 45.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 577 | 45.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 613 | 45.67 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 20 |
| 709 | 45.86 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 737 | 45.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 818 | 46.02 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 855 | 46.06 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 867 | 46.08 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 877 | 46.10 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 889 | 46.11 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 930 | 46.18 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 15 |
| 934 | 46.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 939 | 46.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 943 | 46.20 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 962 | 46.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |