Os06g0160700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Starch synthase I, chloroplast precursor (EC 2.4.1.21) (Soluble starch synthase 1) (SSS 1).
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Os06g0160700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Starch synthase I, chloroplast precursor (EC 2.4.1.21) (Soluble starch synthase 1) (SSS 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233 | 0.717 | 11 | -0.828 | 2.91 | -2.71 | 0.842 | 3.67 | -1.17 | 8.97 | 8.722 | 1231 | 9.5 | 8.3 |
| 243.24 | 0.726 | 11 | -0.718 | 2.82 | -2.67 | 0.627 | -- | -1.1 | 8.89 | 6.091 | 1119 | 8.77 | 9.12 |
| 235.14 | 0.714 | 11 | -0.795 | 2.91 | -2.62 | -- | 3.39 | -1.15 | 8.99 | 8.167 | 1230 | 9.5 | 8.33 |
| 243.64 | 0.727 | 11 | -0.696 | 2.79 | -2.8 | -- | -- | -1.04 | 8.82 | 5.48 | 1108 | 8.82 | 9.35 |
| 345.47 | 0.866 | 11 | -0.331 | -- | -4.24 | -- | 0.161 | -0.952 | -- | 89.87 | 834 | 9.15 | 9.75 |
| 370.95 | 0.903 | 10.9 | -0.377 | 3.01 | -- | 0.168 | -- | -0.684 | 9.25 | -- | -- | -- | -- |
| 371.05 | 0.902 | 10.9 | -0.371 | 3.01 | -- | -- | -- | -0.684 | 9.26 | -- | -- | -- | -- |
| 338.51 | 0.857 | 11.1 | -0.452 | -- | -4.06 | -- | -- | -1.05 | -- | 97.77 | 894 | 8.53 | 10.1 |
| 254.58 | 0.743 | 11 | -- | 2.84 | -2.69 | -- | -- | -0.963 | 8.75 | 6.359 | 1112 | 8.89 | 9.4 |
| 899.37 | 1.4 | 11 | -0.384 | -- | -- | -- | -- | -0.671 | -- | -- | -- | -- | -- |
| 374.68 | 0.905 | 10.9 | -- | 3.01 | -- | -- | -- | -0.643 | 9.27 | -- | -- | -- | -- |
| 329.37 | 0.845 | 11 | -- | -- | -4.06 | -- | -- | -0.946 | -- | 104.7 | 1048 | 7.22 | 10.8 |
| 903.26 | 1.4 | 11 | -- | -- | -- | -- | -- | -0.628 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 4 | 237.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 37 | 244.11 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 52 | 245.92 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 81 | 249.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 87 | 249.96 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 89 | 250.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 94 | 250.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 107 | 250.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 110 | 251.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 116 | 251.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 118 | 251.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 123 | 252.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 130 | 252.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 134 | 252.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 137 | 252.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 185 | 253.64 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 214 | 254.13 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 267 | 254.88 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 282 | 254.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 381 | 256.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 429 | 257.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 447 | 258.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 498 | 259.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 523 | 259.66 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 556 | 260.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 595 | 260.39 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 617 | 260.60 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 655 | 261.03 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 683 | 261.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 699 | 261.37 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 775 | 261.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 848 | 262.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 868 | 262.13 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 873 | 262.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 911 | 262.30 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 931 | 262.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 961 | 262.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 15 |