Os06g0160400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0160400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.39 | 0.19 | 10.4 | 0.425 | 0.206 | 0.719 | -0.799 | 0.811 | 0.0333 | 3.76 | 25.18 | 137 | -- | -- |
| 17.17 | 0.193 | 10.4 | 0.543 | 0.198 | 0.648 | -0.551 | -- | 0.0652 | 3.71 | 25.71 | 158 | -- | -- |
| 17.99 | 0.198 | 10.4 | 0.459 | 0.219 | 0.722 | -- | 0.627 | 0.0567 | 3.66 | 25 | 189 | -- | -- |
| 18.06 | 0.198 | 10.4 | 0.555 | 0.202 | 0.646 | -- | -- | 0.063 | 3.76 | 25.56 | 157 | -- | -- |
| 19.49 | 0.206 | 10.4 | 0.526 | -- | 0.755 | -- | 0.266 | 0.0618 | -- | 27.02 | 157 | -- | -- |
| 23.27 | 0.226 | 10.4 | 0.389 | 0.329 | -- | -0.528 | -- | -0.0708 | 3.53 | -- | -- | -- | -- |
| 24.13 | 0.23 | 10.4 | 0.398 | 0.326 | -- | -- | -- | -0.0677 | 3.47 | -- | -- | -- | -- |
| 19.49 | 0.206 | 10.4 | 0.597 | -- | 0.76 | -- | -- | 0.0989 | -- | 27.35 | 136 | -- | -- |
| 25.44 | 0.236 | 10.4 | -- | 0.257 | 0.416 | -- | -- | -0.0355 | 4.13 | 25.56 | 157 | -- | -- |
| 30.07 | 0.256 | 10.4 | 0.412 | -- | -- | -- | -- | -0.0591 | -- | -- | -- | -- | -- |
| 28.3 | 0.249 | 10.4 | -- | 0.334 | -- | -- | -- | -0.112 | 3.46 | -- | -- | -- | -- |
| 28.07 | 0.247 | 10.4 | -- | -- | 0.563 | -- | -- | -0.00443 | -- | 28.11 | 107 | -- | -- |
| 34.54 | 0.274 | 10.4 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 2 | 15.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 6 | 15.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 42 | 16.40 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 48 | 16.46 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 55 | 16.50 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 11 |
| 56 | 16.51 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 59 | 16.52 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 84 | 16.63 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 95 | 16.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 115 | 16.72 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 126 | 16.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 134 | 16.76 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 148 | 16.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 163 | 16.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 192 | 16.91 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 197 | 16.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 213 | 16.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 225 | 16.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 229 | 17.00 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 240 | 17.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 245 | 17.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 263 | 17.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 343 | 17.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 371 | 17.22 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 394 | 17.26 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 459 | 17.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 497 | 17.40 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 512 | 17.43 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 519 | 17.44 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 1 |
| 558 | 17.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 653 | 17.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 966 | 17.90 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |