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Os06g0159600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.023) R2 : 0.778
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.905 (0.0552) R2dC : 0.131 R2C : 0.16
β3 : 2.2 (0.0664) R2dE : 0.609 R2E : 0.647
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0366 (0.0509) R2dN8 : 0.000369 R2N8 : 0.00955
σ : 0.427
deviance : 83.89
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_____
C
peak time of C : 1.91
E
wheather : temperature
threshold : 19.01
memory length : 47520
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.58 0.406 8.52 1.56 0.886 0.978 -0.734 -3.04 0.547 1.95 25.62 4362 -- --
75.43 0.404 8.45 2.03 0.912 1.03 -0.54 -- 0.609 1.72 21.1 5114 -- --
76.65 0.408 8.52 1.58 0.887 0.983 -- -3.04 0.551 1.94 25.6 4355 -- --
77.34 0.41 8.45 2.01 0.908 1.03 -- -- 0.586 1.94 21 5144 -- --
118.04 0.506 8.5 1.61 -- 1.1 -- -2.95 0.541 -- 25.6 3945 -- --
95.93 0.459 8.38 2.65 0.944 -- -0.8 -- 0.907 1.9 -- -- -- --
98.4 0.465 8.38 2.67 0.942 -- -- -- 0.912 1.87 -- -- -- --
116.03 0.502 8.44 2.32 -- 1.13 -- -- 0.643 -- 25 2496 -- --
83.89 0.427 8.58 -- 0.905 2.2 -- -- 0.0366 1.91 19.01 47520 -- --
152.11 0.576 8.37 2.71 -- -- -- -- 0.933 -- -- -- -- --
286.56 0.792 8.45 -- 0.992 -- -- -- 0.614 1.94 -- -- -- --
133.23 0.538 8.57 -- -- 2.25 -- -- 0.04 -- 19.09 47520 -- --
345.93 0.868 8.44 -- -- -- -- -- 0.633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.48 humidity 70 43200 < th dose dependent rect. 21 13
2 67.51 radiation 40 43200 > th dose independent rect. 7 1
18 67.51 radiation 40 43200 > th dose dependent rect. 7 1
35 67.62 wind 1 14400 < th dose dependent rect. 22 8
39 67.81 humidity 60 43200 > th dose independent rect. 19 15
41 67.87 temperature 15 43200 > th dose independent rect. 24 1
43 67.94 radiation 1 43200 > th dose dependent rect. 17 1
45 67.97 humidity 60 43200 < th dose dependent sin 9 NA
46 67.98 radiation 20 43200 > th dose dependent rect. 15 2
47 67.99 temperature 15 43200 < th dose dependent rect. 23 1
83 68.16 radiation 30 43200 < th dose independent rect. 15 2
84 68.16 radiation 30 43200 < th dose independent rect. 15 5
89 68.16 radiation 30 43200 < th dose independent rect. 15 15
90 68.16 humidity 60 43200 < th dose independent rect. 18 16
110 68.22 temperature 15 43200 < th dose dependent rect. 23 3
116 68.35 temperature 15 43200 < th dose dependent rect. 1 1
136 68.42 radiation 10 43200 < th dose dependent rect. 17 15
165 68.53 temperature 15 43200 < th dose independent rect. 24 1
229 68.75 radiation 20 43200 < th dose dependent rect. 17 1
279 68.87 radiation 40 43200 < th dose dependent rect. 15 16
284 68.91 humidity 60 43200 < th dose dependent rect. 17 20
304 68.96 radiation 40 43200 < th dose independent rect. 14 18
315 69.00 humidity 70 43200 < th dose dependent rect. 7 3
332 69.08 radiation 40 43200 < th dose dependent rect. 15 7
426 69.24 wind 1 43200 < th dose dependent rect. 22 5
432 69.26 radiation 10 43200 < th dose dependent sin 12 NA
445 69.27 humidity 60 43200 < th dose independent rect. 24 11
462 69.28 humidity 60 43200 < th dose dependent rect. 2 11
528 69.35 humidity 60 43200 < th dose independent rect. 8 3
558 69.41 humidity 60 43200 > th dose independent rect. 8 2
681 69.63 radiation 10 43200 < th dose dependent rect. 6 1
715 69.70 radiation 10 43200 < th dose dependent rect. 3 4
774 69.78 radiation 40 43200 < th dose independent rect. 1 7
779 69.79 radiation 40 43200 < th dose independent rect. 3 5
785 69.80 humidity 60 43200 < th dose independent rect. 9 1
800 69.82 radiation 40 43200 < th dose independent rect. 18 14
810 69.83 radiation 40 43200 < th dose independent rect. 20 12
814 69.84 radiation 40 43200 < th dose independent rect. 5 3
816 69.84 radiation 40 43200 < th dose independent rect. 23 9
825 69.86 radiation 40 43200 < th dose independent rect. 7 1
871 69.93 atmosphere 1015 43200 > th dose dependent rect. 12 12
879 69.95 atmosphere 1015 43200 > th dose dependent rect. 20 2
885 69.95 atmosphere 1015 43200 > th dose dependent rect. 15 9
894 69.96 atmosphere 1015 43200 > th dose dependent rect. 18 5
901 69.99 atmosphere 1015 43200 > th dose dependent rect. 14 11
953 70.09 radiation 20 43200 > th dose dependent sin 14 NA
956 70.10 atmosphere 1015 43200 > th dose independent rect. 16 5
961 70.11 radiation 40 43200 < th dose dependent sin 13 NA
962 70.12 humidity 90 43200 > th dose independent rect. 24 1
992 70.17 radiation 1 43200 > th dose dependent sin 14 NA