Os06g0159400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os06g0159400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.64 | 0.642 | 3.97 | -0.46 | 1.57 | 1.24 | 0.884 | -1.05 | -0.00514 | 23 | 19.61 | 1662 | -- | -- |
| 188.2 | 0.639 | 3.96 | -0.442 | 1.53 | 1.36 | 1.04 | -- | 0.00375 | 22.8 | 19.7 | 2760 | -- | -- |
| 189.92 | 0.642 | 3.97 | -0.503 | 1.56 | 1.26 | -- | -1.05 | -0.0133 | 23 | 19.65 | 1662 | -- | -- |
| 191.6 | 0.645 | 3.94 | -0.362 | 1.55 | 1.45 | -- | -- | 0.0174 | 23 | 19.69 | 1648 | -- | -- |
| 325.69 | 0.841 | 3.94 | -0.645 | -- | 1.49 | -- | -0.61 | -0.0825 | -- | 20.1 | 2339 | -- | -- |
| 221.87 | 0.698 | 3.88 | 0.25 | 1.56 | -- | 1.03 | -- | 0.29 | 22.9 | -- | -- | -- | -- |
| 226.3 | 0.704 | 3.88 | 0.208 | 1.55 | -- | -- | -- | 0.286 | 23 | -- | -- | -- | -- |
| 325.92 | 0.841 | 3.93 | -0.544 | -- | 1.61 | -- | -- | -0.0778 | -- | 19.91 | 2311 | -- | -- |
| 194.33 | 0.649 | 3.93 | -- | 1.55 | 1.27 | -- | -- | 0.0819 | 23 | 19.62 | 1634 | -- | -- |
| 376.52 | 0.907 | 3.85 | 0.242 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 227.44 | 0.705 | 3.89 | -- | 1.56 | -- | -- | -- | 0.263 | 23 | -- | -- | -- | -- |
| 318.36 | 0.831 | 3.92 | -- | -- | 1.24 | -- | -- | -0.0195 | -- | 21.32 | 888 | -- | -- |
| 378.07 | 0.908 | 3.85 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 2 | 185.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 29 | 187.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 32 | 187.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 37 | 187.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 39 | 187.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 82 | 187.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 118 | 187.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 122 | 187.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 124 | 187.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 131 | 187.47 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 147 | 187.53 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 148 | 187.53 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 149 | 187.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 152 | 187.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 159 | 187.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 160 | 187.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 164 | 187.57 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 173 | 187.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 177 | 187.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 178 | 187.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 192 | 187.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 193 | 187.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 234 | 187.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 260 | 187.82 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 347 | 188.05 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 374 | 188.13 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 402 | 188.22 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 516 | 188.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 539 | 188.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 557 | 188.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 645 | 189.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 690 | 189.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 707 | 189.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 786 | 189.67 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 816 | 189.87 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 930 | 190.48 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |