Os06g0158500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0158500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133 | 0.542 | 6.73 | 1.82 | 2.83 | -0.662 | -0.73 | 0.317 | 0.682 | 19.8 | 19.7 | 614 | -- | -- |
| 133.11 | 0.537 | 6.74 | 1.78 | 2.83 | -0.713 | -0.644 | -- | 0.674 | 19.8 | 19.69 | 588 | -- | -- |
| 134.25 | 0.54 | 6.74 | 1.8 | 2.83 | -0.701 | -- | 0.0221 | 0.669 | 19.8 | 19.6 | 591 | -- | -- |
| 134.25 | 0.54 | 6.74 | 1.79 | 2.83 | -0.712 | -- | -- | 0.671 | 19.8 | 19.68 | 588 | -- | -- |
| 542.85 | 1.09 | 6.65 | 1.86 | -- | -1.04 | -- | 0.568 | 0.643 | -- | 18 | 1506 | -- | -- |
| 144.5 | 0.564 | 6.77 | 1.52 | 2.75 | -- | -0.65 | -- | 0.546 | 19.8 | -- | -- | -- | -- |
| 145.69 | 0.565 | 6.77 | 1.54 | 2.75 | -- | -- | -- | 0.545 | 19.8 | -- | -- | -- | -- |
| 543.61 | 1.09 | 6.65 | 1.79 | -- | -1.03 | -- | -- | 0.618 | -- | 17.3 | 2893 | -- | -- |
| 207.33 | 0.674 | 6.81 | -- | 2.73 | 0.41 | -- | -- | 0.367 | 19.8 | 16.5 | 451 | -- | -- |
| 553.65 | 1.1 | 6.7 | 1.51 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 208.16 | 0.675 | 6.81 | -- | 2.74 | -- | -- | -- | 0.373 | 19.8 | -- | -- | -- | -- |
| 409.99 | 0.943 | 6.78 | -- | -- | 2 | -- | -- | -0.173 | -- | 26.3 | 589 | -- | -- |
| 613.46 | 1.16 | 6.74 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.38 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 2 | 125.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 4 | 126.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 17 | 128.27 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 19 | 128.36 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 2 |
| 21 | 128.46 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 4 |
| 22 | 128.50 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 16 |
| 34 | 129.12 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 14 |
| 44 | 129.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 62 | 130.27 | temperature | 25 | 30 | > th | dose independent | rect. | 2 | 8 |
| 72 | 130.45 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 101 | 131.25 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 3 |
| 104 | 131.32 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 109 | 131.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 118 | 131.66 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 126 | 131.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 132 | 131.78 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 6 |
| 142 | 131.90 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 165 | 132.11 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 172 | 132.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 175 | 132.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 183 | 132.24 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 192 | 132.33 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 199 | 132.38 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 219 | 132.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 221 | 132.46 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 3 | 4 |
| 238 | 132.54 | temperature | 20 | 270 | > th | dose independent | sin | 5 | NA |
| 240 | 132.55 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 21 |
| 252 | 132.61 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 16 |
| 267 | 132.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 14 |
| 280 | 132.73 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 281 | 132.73 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 293 | 132.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 9 |
| 319 | 132.88 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 20 |
| 331 | 132.91 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 332 | 132.91 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 339 | 132.94 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 342 | 132.96 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 3 | 6 |
| 345 | 132.97 | wind | 7 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 348 | 132.97 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 437 | 133.20 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 22 |
| 439 | 133.21 | wind | 9 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 470 | 133.30 | wind | 9 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 478 | 133.33 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 497 | 133.38 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 7 |
| 513 | 133.41 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 516 | 133.41 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 522 | 133.43 | wind | 7 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 523 | 133.43 | wind | 7 | 270 | < th | dose independent | rect. | 10 | 17 |
| 530 | 133.44 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 559 | 133.49 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 566 | 133.51 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 11 |
| 568 | 133.51 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 591 | 133.56 | wind | 7 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 606 | 133.59 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 618 | 133.60 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 625 | 133.61 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 627 | 133.62 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 637 | 133.63 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 3 | 4 |
| 658 | 133.67 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 664 | 133.68 | radiation | 30 | 30 | < th | dose independent | rect. | 17 | 16 |
| 673 | 133.69 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 680 | 133.72 | temperature | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 681 | 133.72 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 3 |
| 716 | 133.78 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 9 |
| 760 | 133.87 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 5 |
| 763 | 133.87 | wind | 7 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 774 | 133.89 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 775 | 133.89 | wind | 3 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 783 | 133.91 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 6 |
| 789 | 133.91 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 12 |
| 792 | 133.93 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 9 |
| 802 | 133.96 | wind | 7 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 809 | 133.97 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 15 |
| 833 | 134.01 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 1 |
| 863 | 134.04 | radiation | 10 | 10 | < th | dose independent | rect. | 3 | 23 |
| 877 | 134.07 | humidity | 70 | 30 | > th | dose independent | rect. | 16 | 17 |
| 955 | 134.16 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 961 | 134.17 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 16 |