Os06g0158400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0158400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.5 | 0.485 | 5.82 | 0.63 | 0.416 | -0.301 | -1.36 | 1.51 | -0.101 | 23.3 | 20 | 87 | -- | -- |
| 112.06 | 0.493 | 5.82 | 0.595 | 0.313 | -0.217 | -0.292 | -- | -0.0952 | 22.6 | 29.99 | 49 | -- | -- |
| 111.89 | 0.496 | 5.81 | 0.638 | 0.349 | -0.176 | -- | 0.417 | -0.0779 | 22.6 | 20 | 87 | -- | -- |
| 106.26 | 0.48 | 5.82 | 0.603 | 0.24 | -0.556 | -- | -- | -0.136 | 21.7 | 20.01 | 47520 | -- | -- |
| 115.21 | 0.5 | 5.8 | 0.662 | -- | -0.0667 | -- | 0.599 | -0.0773 | -- | 29.4 | 30 | -- | -- |
| 113.74 | 0.5 | 5.81 | 0.613 | 0.237 | -- | -0.314 | -- | -0.0807 | 21.6 | -- | -- | -- | -- |
| 114.11 | 0.5 | 5.81 | 0.624 | 0.238 | -- | -- | -- | -0.0804 | 21.7 | -- | -- | -- | -- |
| 109.52 | 0.487 | 5.81 | 0.6 | -- | -0.554 | -- | -- | -0.134 | -- | 20.01 | 47520 | -- | -- |
| 115.94 | 0.501 | 5.82 | -- | 0.223 | -0.526 | -- | -- | -0.148 | 22 | 20 | 47520 | -- | -- |
| 117.48 | 0.506 | 5.8 | 0.626 | -- | -- | -- | -- | -0.0807 | -- | -- | -- | -- | -- |
| 124.38 | 0.522 | 5.82 | -- | 0.24 | -- | -- | -- | -0.15 | 21.9 | -- | -- | -- | -- |
| 118.97 | 0.508 | 5.83 | -- | -- | -0.539 | -- | -- | -0.203 | -- | 20 | 46913 | -- | -- |
| 127.82 | 0.528 | 5.82 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 3 | 99.80 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 5 | 100.22 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 6 | 100.41 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 9 | 100.44 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 10 | 100.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 12 | 100.50 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 26 | 101.47 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 32 | 101.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 33 | 101.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 35 | 101.91 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 37 | 101.94 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 40 | 102.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 41 | 102.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 42 | 102.07 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 50 | 102.19 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 58 | 102.35 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 102.40 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 75 | 102.57 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 77 | 102.58 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 82 | 102.63 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 90 | 102.74 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 110 | 102.87 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 115 | 102.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 140 | 103.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 145 | 103.04 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 156 | 103.10 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 164 | 103.13 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 184 | 103.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 197 | 103.22 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 200 | 103.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 203 | 103.23 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 208 | 103.23 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 227 | 103.27 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 241 | 103.30 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 256 | 103.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 260 | 103.34 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 275 | 103.36 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 281 | 103.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 298 | 103.40 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 299 | 103.40 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 305 | 103.42 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 309 | 103.43 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 318 | 103.45 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 320 | 103.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 327 | 103.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 332 | 103.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 337 | 103.49 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 376 | 103.55 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 377 | 103.55 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 410 | 103.61 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 418 | 103.62 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 424 | 103.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 466 | 103.68 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 470 | 103.68 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 484 | 103.69 | wind | 3.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 579 | 103.78 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 580 | 103.78 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 592 | 103.78 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 641 | 103.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 645 | 103.84 | wind | 5.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 666 | 103.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 756 | 103.91 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 764 | 103.91 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 16 |
| 824 | 103.96 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 833 | 103.97 | wind | 5.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 856 | 103.98 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 870 | 103.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 980 | 104.05 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |