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Os06g0158300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0187) R2 : 0.743
β1 : 0.934 (0.0685) R2dD : 0.109 R2D : 0.0686
β2 : 1.54 (0.0471) R2dC : 0.607 R2C : 0.578
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.436 (0.0399) R2dN8 : 0.0899 R2N8 : 0.0278
σ : 0.352
deviance : 56.45
__
_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.42 0.34 8.72 0.82 1.56 -1.1 -0.088 -1.36 0.408 20.3 6.599 75 -- --
52.88 0.339 8.73 0.841 1.56 -0.712 -0.0336 -- 0.403 20.2 6.2 78 -- --
52.42 0.337 8.72 0.825 1.56 -1.01 -- -1.14 0.409 20.3 6.313 78 -- --
52.89 0.339 8.73 0.84 1.56 -0.703 -- -- 0.406 20.3 6.2 78 -- --
185.86 0.635 8.67 0.854 -- -1.11 -- -1.24 0.394 -- 7.6 76 -- --
56.45 0.352 8.72 0.934 1.54 -- -0.0123 -- 0.436 20.4 -- -- -- --
56.45 0.352 8.72 0.934 1.54 -- -- -- 0.436 20.4 -- -- -- --
186.06 0.635 8.69 0.846 -- -0.773 -- -- 0.39 -- 7.6 76 -- --
70.14 0.39 8.75 -- 1.59 -0.985 -- -- 0.317 20.2 5.6 75 -- --
189.09 0.643 8.68 0.926 -- -- -- -- 0.42 -- -- -- -- --
79.45 0.417 8.74 -- 1.54 -- -- -- 0.332 20.5 -- -- -- --
203.89 0.665 8.71 -- -- -1.19 -- -- 0.284 -- 7.5 76 -- --
211.72 0.679 8.7 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.10 wind 7.0 270 < th dose independent rect. 9 23
2 51.24 wind 5.0 90 > th dose dependent rect. 15 21
3 51.37 wind 7.0 90 > th dose independent rect. 15 21
6 51.45 wind 9.0 10 > th dose independent rect. 17 19
10 51.46 wind 7.0 270 < th dose independent rect. 9 9
15 51.60 wind 7.0 90 < th dose independent rect. 12 7
17 51.63 temperature 25.0 90 > th dose independent rect. 12 7
18 51.63 humidity 50.0 270 > th dose dependent rect. 15 21
28 51.74 humidity 50.0 270 > th dose independent rect. 13 23
29 51.74 humidity 50.0 270 > th dose dependent rect. 17 18
31 51.76 radiation 1.0 720 < th dose dependent rect. 6 21
32 51.77 wind 5.0 720 < th dose independent rect. 3 16
36 51.79 wind 9.0 90 < th dose dependent rect. 12 7
45 51.85 temperature 15.0 270 > th dose dependent rect. 9 10
64 51.96 temperature 20.0 10 > th dose dependent rect. 12 10
66 51.97 temperature 25.0 10 > th dose independent rect. 12 10
74 51.99 temperature 25.0 4320 > th dose independent rect. 11 1
78 52.02 wind 5.0 720 < th dose independent rect. 3 13
79 52.02 wind 7.0 270 < th dose independent rect. 21 22
85 52.04 temperature 15.0 90 > th dose dependent rect. 12 7
89 52.05 radiation 1.0 1440 > th dose independent rect. 15 1
96 52.06 temperature 30.0 270 < th dose independent rect. 13 23
97 52.06 wind 5.0 10 > th dose dependent rect. 7 5
100 52.06 temperature 30.0 90 < th dose dependent rect. 10 13
101 52.07 wind 5.0 720 < th dose independent rect. 7 9
105 52.08 radiation 1.0 720 < th dose independent rect. 6 21
113 52.10 wind 1.0 10 > th dose dependent rect. 6 6
114 52.10 wind 9.0 720 < th dose dependent rect. 7 8
123 52.12 radiation 1.0 1440 < th dose independent rect. 15 1
128 52.14 temperature 25.0 4320 < th dose independent rect. 11 1
135 52.15 wind 5.0 720 < th dose independent sin 1 NA
138 52.15 temperature 20.0 10 > th dose dependent rect. 12 8
143 52.16 wind 5.0 720 < th dose independent rect. 7 12
145 52.16 wind 1.0 43200 < th dose dependent rect. 6 2
160 52.19 radiation 1.0 1440 > th dose independent rect. 14 3
164 52.19 wind 7.0 720 < th dose dependent rect. 7 12
171 52.21 wind 7.0 90 > th dose dependent rect. 22 13
177 52.22 wind 5.0 10 > th dose dependent rect. 23 13
180 52.23 radiation 1.0 1440 < th dose independent rect. 14 3
181 52.23 temperature 25.0 90 < th dose independent rect. 10 13
185 52.23 wind 9.0 270 < th dose dependent rect. 9 9
186 52.23 wind 5.0 10 > th dose dependent rect. 1 11
202 52.25 wind 9.0 720 < th dose dependent rect. 3 16
205 52.26 radiation 1.0 1440 < th dose independent rect. 8 9
209 52.26 radiation 1.0 1440 < th dose dependent rect. 15 1
223 52.28 radiation 1.0 1440 > th dose independent rect. 8 9
224 52.28 wind 9.0 720 > th dose independent rect. 22 13
235 52.29 radiation 1.0 1440 < th dose dependent rect. 14 3
239 52.29 wind 1.0 90 > th dose dependent rect. 15 21
249 52.31 temperature 20.0 30 > th dose dependent rect. 12 18
252 52.32 humidity 70.0 10 < th dose independent rect. 12 8
278 52.34 wind 1.0 1440 < th dose dependent rect. 13 3
285 52.35 wind 1.0 43200 < th dose independent rect. 6 2
302 52.36 temperature 30.0 10 < th dose dependent rect. 11 12
311 52.37 radiation 1.0 1440 < th dose dependent rect. 8 9
323 52.38 humidity 80.0 720 < th dose independent rect. 23 15
327 52.38 wind 7.0 720 < th dose dependent sin 23 NA
344 52.40 radiation 1.0 90 > th dose independent rect. 12 7
374 52.42 temperature 10.0 30 > th dose dependent rect. 12 18
395 52.44 wind 9.0 720 > th dose dependent rect. 22 13
407 52.45 wind 3.0 720 > th dose dependent rect. 5 13
413 52.46 humidity 80.0 720 < th dose independent rect. 21 17
425 52.47 temperature 25.0 10 < th dose independent rect. 11 11
428 52.47 wind 5.0 720 < th dose independent rect. 3 21
429 52.47 temperature 30.0 90 < th dose independent rect. 15 21
435 52.48 wind 1.0 1440 < th dose independent rect. 13 3
437 52.48 wind 9.0 90 > th dose independent rect. 22 13
452 52.49 wind 3.0 720 > th dose dependent rect. 7 11
464 52.50 wind 7.0 90 > th dose dependent rect. 9 2
483 52.51 temperature 15.0 90 > th dose dependent sin 19 NA
497 52.52 wind 7.0 90 < th dose independent rect. 3 16
498 52.52 humidity 50.0 90 > th dose independent rect. 15 21
504 52.53 precipitation 0.1 1440 > th dose independent rect. 23 2
507 52.53 wind 7.0 270 < th dose independent rect. 23 16
510 52.53 precipitation 0.1 1440 > th dose dependent rect. 23 2
521 52.54 wind 9.0 720 > th dose independent rect. 1 10
534 52.54 wind 9.0 90 > th dose dependent rect. 1 10
546 52.55 wind 7.0 90 < th dose independent sin 6 NA
558 52.56 humidity 80.0 720 < th dose independent sin 7 NA
561 52.56 wind 5.0 720 > th dose independent rect. 5 13
568 52.56 wind 9.0 720 > th dose dependent rect. 10 1
578 52.57 wind 5.0 720 > th dose independent rect. 7 11
596 52.58 wind 7.0 90 < th dose independent rect. 1 18
597 52.58 wind 7.0 90 > th dose independent rect. 22 22
636 52.59 humidity 90.0 90 < th dose dependent rect. 12 18
637 52.59 wind 5.0 720 > th dose dependent rect. 23 19
639 52.60 wind 1.0 43200 > th dose independent rect. 6 2
645 52.60 wind 7.0 90 < th dose independent rect. 12 18
658 52.61 wind 7.0 90 > th dose independent rect. 9 2
673 52.61 wind 7.0 720 < th dose independent rect. 7 17
686 52.61 wind 7.0 90 > th dose dependent rect. 22 22
687 52.62 wind 7.0 90 < th dose independent no NA NA
749 52.65 wind 7.0 10 > th dose independent rect. 9 3
780 52.65 wind 9.0 720 < th dose dependent rect. 3 21
781 52.66 wind 9.0 720 > th dose independent rect. 9 2
825 52.67 wind 9.0 720 > th dose dependent rect. 1 10
855 52.68 wind 1.0 30 > th dose dependent rect. 19 17
876 52.69 wind 7.0 14400 > th dose dependent rect. 15 1
900 52.70 radiation 1.0 720 < th dose dependent rect. 14 13
905 52.70 humidity 90.0 10 < th dose dependent rect. 12 18
938 52.72 humidity 70.0 10 > th dose independent sin 15 NA
946 52.72 wind 7.0 10 < th dose independent rect. 3 16
947 52.72 wind 3.0 720 > th dose dependent sin 0 NA
969 52.73 wind 9.0 90 > th dose independent rect. 1 10
970 52.73 wind 7.0 10 > th dose independent rect. 2 10
984 52.73 radiation 1.0 1440 < th dose independent rect. 8 22