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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0158100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 63.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0464) R2 : 0.449
β1 : 3.62 (0.226) R2dD : 0.615 R2D : -0.113
β2 : 0.811 (0.116) R2dC : 0.0598 R2C : 0.0805
β3 : -1.46 (0.187) R2dE : 0.092 R2E : -0.0426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.51 (0.855) R2dD*E : 0.293 R2D*E : -0.223
γ1 : 0.763 (0.0956) R2dN8 : 0.106 R2N8 : 0.0215
σ : 0.832
deviance : 319.07
__
_____
C
peak time of C : 5.35
E
wheather : radiation
threshold : 1.367
memory length : 4319
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 6.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.34 0.84 5.35 3.75 0.819 -1.44 0.367 -9.24 0.762 5.49 1.081 4318 18 6
359.33 0.883 5.28 2.05 0.942 -1.86 0.239 -- 0.488 4 5.537 14618 15.8 10.1
319.07 0.832 5.35 3.62 0.811 -1.46 -- -9.51 0.763 5.35 1.367 4319 18 6.07
345.35 0.866 5.29 2.19 0.785 -1.74 -- -- 0.351 4.2 6.251 18825 15.9 12.6
352.64 0.875 5.35 3.65 -- -1.62 -- -9.76 0.809 -- 1.429 4321 18 6.37
432.52 0.975 5.23 1.69 0.913 -- 0.595 -- 0.704 5.07 -- -- -- --
433.38 0.975 5.23 1.69 0.918 -- -- -- 0.701 5.17 -- -- -- --
382.35 0.911 5.29 2.19 -- -1.64 -- -- 0.352 -- 5.339 18736 15.9 12.6
352.32 0.874 5.41 -- 0.734 -1.82 -- -- -0.0329 5.61 0.5537 47520 12.3 16.3
477.51 1.02 5.24 1.72 -- -- -- -- 0.725 -- -- -- -- --
508.74 1.06 5.28 -- 0.948 -- -- -- 0.513 5.11 -- -- -- --
387.28 0.917 5.46 -- -- -2.07 -- -- -0.248 -- 2.016 47520 11.5 13.9
555.85 1.1 5.29 -- -- -- -- -- 0.533 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.90 wind 3.0 43200 < th dose dependent rect. 3 1
5 319.55 radiation 1.0 4320 < th dose dependent rect. 18 6
6 319.56 radiation 1.0 4320 < th dose dependent rect. 18 2
16 320.34 precipitation 0.1 43200 > th dose dependent rect. 13 1
17 320.80 precipitation 0.1 43200 > th dose dependent rect. 1 19
19 321.16 precipitation 0.1 43200 > th dose dependent rect. 23 21
24 321.54 precipitation 0.1 43200 > th dose dependent rect. 1 4
28 322.67 precipitation 0.1 43200 > th dose independent rect. 13 1
29 322.70 precipitation 0.1 43200 > th dose dependent rect. 19 12
31 322.79 precipitation 0.1 43200 < th dose independent rect. 13 1
32 322.79 precipitation 0.1 43200 < th dose dependent rect. 13 1
34 322.83 precipitation 0.1 43200 > th dose independent rect. 3 17
35 322.90 precipitation 0.1 43200 < th dose independent rect. 3 17
36 322.90 precipitation 0.1 43200 < th dose dependent rect. 3 17
44 323.36 precipitation 0.1 43200 > th dose dependent rect. 3 14
46 323.51 precipitation 0.1 43200 > th dose dependent rect. 16 1
52 323.67 precipitation 0.1 43200 > th dose dependent rect. 18 3
65 324.16 precipitation 0.1 43200 > th dose independent rect. 16 1
70 324.25 precipitation 0.1 43200 > th dose dependent rect. 13 19
72 324.28 precipitation 0.1 43200 > th dose dependent rect. 24 6
74 324.31 precipitation 0.1 43200 < th dose independent rect. 16 1
75 324.31 precipitation 0.1 43200 < th dose dependent rect. 16 1
87 324.72 radiation 1.0 14400 < th dose independent rect. 18 2
89 324.77 precipitation 0.1 43200 > th dose independent rect. 13 7
90 324.78 radiation 1.0 14400 < th dose independent rect. 18 6
93 324.80 precipitation 0.1 43200 < th dose independent rect. 13 7
94 324.80 precipitation 0.1 43200 < th dose dependent rect. 13 7
101 324.94 precipitation 0.1 43200 > th dose independent rect. 19 2
103 324.97 precipitation 0.1 43200 > th dose independent rect. 3 15
105 325.05 precipitation 0.1 43200 < th dose independent rect. 3 15
106 325.05 precipitation 0.1 43200 < th dose dependent rect. 3 15
109 325.12 precipitation 0.1 43200 < th dose independent rect. 19 2
110 325.12 precipitation 0.1 43200 < th dose dependent rect. 19 2
112 325.18 precipitation 0.1 43200 > th dose independent rect. 1 4
116 325.23 wind 1.0 43200 > th dose dependent rect. 3 1
121 325.30 precipitation 0.1 43200 < th dose independent rect. 1 4
122 325.30 precipitation 0.1 43200 < th dose dependent rect. 1 4
136 325.45 precipitation 0.1 43200 > th dose dependent sin 10 NA
138 325.46 precipitation 0.1 43200 > th dose independent rect. 15 5
140 325.53 precipitation 0.1 43200 < th dose independent rect. 15 5
142 325.53 precipitation 0.1 43200 < th dose dependent rect. 15 5
149 325.56 precipitation 0.1 43200 > th dose independent rect. 23 21
150 325.56 precipitation 0.1 43200 < th dose independent rect. 23 21
153 325.56 precipitation 0.1 43200 < th dose dependent rect. 23 21
162 325.60 precipitation 0.1 43200 > th dose dependent sin 2 NA
163 325.60 precipitation 0.1 43200 > th dose dependent rect. 19 19
167 325.64 precipitation 0.1 43200 > th dose dependent rect. 15 23
178 325.72 humidity 90.0 43200 > th dose independent rect. 9 1
179 325.72 humidity 80.0 43200 > th dose independent rect. 14 1
182 325.72 precipitation 0.1 43200 > th dose dependent rect. 19 22
192 325.86 precipitation 0.1 43200 > th dose independent rect. 15 17
199 325.89 precipitation 0.1 43200 < th dose independent rect. 15 17
200 325.89 precipitation 0.1 43200 < th dose dependent rect. 15 17
214 325.98 precipitation 0.1 43200 > th dose dependent rect. 3 11
223 326.08 precipitation 0.1 43200 > th dose dependent no NA NA
256 326.39 precipitation 0.1 43200 > th dose independent rect. 13 19
259 326.41 precipitation 0.1 43200 < th dose independent rect. 13 19
260 326.41 precipitation 0.1 43200 < th dose dependent rect. 13 19
270 326.45 precipitation 0.1 43200 > th dose dependent rect. 7 23
290 326.69 precipitation 0.1 43200 > th dose dependent rect. 13 4
293 326.74 humidity 80.0 43200 > th dose independent rect. 10 5
337 327.16 radiation 1.0 14400 > th dose independent rect. 18 1
348 327.18 humidity 80.0 43200 > th dose dependent rect. 10 1
358 327.26 humidity 80.0 43200 > th dose dependent rect. 10 8
375 327.39 precipitation 0.1 43200 > th dose independent rect. 24 6
383 327.44 precipitation 0.1 43200 > th dose dependent rect. 3 8
387 327.47 humidity 90.0 43200 < th dose independent rect. 19 1
389 327.49 precipitation 0.1 43200 < th dose independent rect. 24 6
390 327.49 precipitation 0.1 43200 < th dose dependent rect. 24 6
410 327.73 humidity 80.0 43200 < th dose independent rect. 14 1
420 327.82 wind 3.0 43200 > th dose independent rect. 8 1
441 327.92 humidity 80.0 43200 > th dose dependent rect. 14 4
472 328.16 humidity 90.0 43200 > th dose dependent rect. 8 2
475 328.17 humidity 80.0 43200 > th dose dependent rect. 9 6
482 328.21 precipitation 0.1 43200 > th dose independent rect. 19 12
486 328.22 humidity 90.0 43200 > th dose independent rect. 20 2
489 328.22 precipitation 0.1 43200 > th dose dependent rect. 4 5
495 328.25 precipitation 0.1 43200 < th dose independent rect. 19 12
496 328.25 precipitation 0.1 43200 < th dose dependent rect. 19 12
504 328.32 humidity 80.0 43200 < th dose independent rect. 11 4
512 328.37 humidity 80.0 43200 > th dose dependent rect. 16 2
530 328.49 precipitation 0.1 43200 > th dose dependent rect. 9 11
541 328.60 precipitation 0.1 43200 < th dose independent rect. 4 2
542 328.60 precipitation 0.1 43200 < th dose dependent rect. 4 2
544 328.62 precipitation 0.1 43200 > th dose independent rect. 4 2
641 329.19 precipitation 0.1 43200 < th dose independent rect. 4 5
642 329.19 precipitation 0.1 43200 < th dose dependent rect. 4 5
649 329.20 precipitation 0.1 43200 > th dose dependent rect. 18 6
668 329.34 precipitation 0.1 43200 > th dose independent rect. 4 5
690 329.47 precipitation 0.1 43200 > th dose independent rect. 3 8
701 329.57 humidity 90.0 43200 > th dose dependent rect. 20 1
710 329.65 precipitation 0.1 43200 < th dose independent rect. 3 8
712 329.65 precipitation 0.1 43200 < th dose dependent rect. 3 8
740 329.77 wind 3.0 43200 < th dose independent rect. 8 1
768 329.86 humidity 90.0 43200 > th dose independent rect. 12 10
775 329.89 precipitation 0.1 43200 > th dose independent rect. 3 11
780 329.91 humidity 90.0 43200 > th dose independent rect. 16 6
793 329.94 precipitation 0.1 43200 < th dose independent rect. 3 11
794 329.94 precipitation 0.1 43200 < th dose dependent rect. 3 11
797 329.97 wind 1.0 43200 > th dose independent rect. 3 1
815 330.08 precipitation 0.1 43200 > th dose independent rect. 19 23
817 330.09 precipitation 0.1 43200 < th dose independent rect. 19 23
818 330.09 precipitation 0.1 43200 < th dose dependent rect. 19 23
820 330.10 humidity 90.0 43200 > th dose independent rect. 8 14
829 330.29 precipitation 0.1 43200 > th dose independent sin 10 NA
834 330.31 precipitation 0.1 43200 < th dose independent sin 10 NA
835 330.31 precipitation 0.1 43200 < th dose dependent sin 10 NA
857 330.42 humidity 90.0 43200 > th dose dependent rect. 15 7
861 330.44 precipitation 0.1 43200 < th dose independent rect. 13 4
862 330.44 precipitation 0.1 43200 < th dose dependent rect. 13 4
866 330.47 precipitation 0.1 43200 > th dose independent rect. 13 4
929 330.67 humidity 90.0 43200 > th dose dependent rect. 13 9
951 330.75 precipitation 0.1 43200 > th dose dependent rect. 24 11
958 330.82 humidity 90.0 14400 > th dose dependent rect. 1 1
968 330.86 wind 3.0 43200 < th dose independent rect. 3 1
976 330.91 humidity 90.0 43200 < th dose independent rect. 8 2