Os06g0158000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl-CoA synthetase (EC 6.2.1.3).
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Os06g0158000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl-CoA synthetase (EC 6.2.1.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.32 | 0.464 | 9.6 | 1.17 | 0.534 | -1.14 | 0.299 | 1.51 | 0.913 | 1.08 | 1005 | 223 | -- | -- |
| 100.84 | 0.468 | 9.6 | 1.2 | 0.567 | -1.17 | 0.201 | -- | 0.908 | 1.19 | 1005 | 158 | -- | -- |
| 97.57 | 0.46 | 9.6 | 1.18 | 0.554 | -1.14 | -- | 1.57 | 0.917 | 1.04 | 1004 | 158 | -- | -- |
| 100.95 | 0.468 | 9.59 | 1.2 | 0.557 | -1.18 | -- | -- | 0.909 | 1.3 | 1005 | 156 | -- | -- |
| 114.38 | 0.498 | 9.59 | 1.15 | -- | -1.22 | -- | 1.5 | 0.935 | -- | 1005 | 361 | -- | -- |
| 122.31 | 0.518 | 9.64 | 1.25 | 0.593 | -- | 0.123 | -- | 0.706 | 0.705 | -- | -- | -- | -- |
| 122.37 | 0.518 | 9.64 | 1.25 | 0.594 | -- | -- | -- | 0.705 | 0.767 | -- | -- | -- | -- |
| 118.07 | 0.506 | 9.58 | 1.2 | -- | -1.27 | -- | -- | 0.929 | -- | 1005 | 370 | -- | -- |
| 138.74 | 0.549 | 9.62 | -- | 0.554 | -1.26 | -- | -- | 0.788 | 1.35 | 1005 | 245 | -- | -- |
| 144.39 | 0.561 | 9.63 | 1.27 | -- | -- | -- | -- | 0.716 | -- | -- | -- | -- | -- |
| 163.37 | 0.598 | 9.67 | -- | 0.613 | -- | -- | -- | 0.566 | 0.86 | -- | -- | -- | -- |
| 155.45 | 0.581 | 9.61 | -- | -- | -1.39 | -- | -- | 0.806 | -- | 1006 | 578 | -- | -- |
| 186.86 | 0.638 | 9.66 | -- | -- | -- | -- | -- | 0.575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 6 | 91.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 7 | 92.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 16 | 92.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 30 | 92.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 31 | 92.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 120 | 95.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 122 | 95.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 124 | 95.86 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 175 | 95.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 177 | 95.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 179 | 95.86 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 279 | 96.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 303 | 97.25 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 310 | 97.39 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 311 | 97.40 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 322 | 97.54 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 324 | 97.60 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 325 | 97.60 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 333 | 97.66 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 339 | 97.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 346 | 97.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 349 | 97.73 | atmosphere | 1005 | 270 | > th | dose dependent | no | NA | NA |
| 351 | 97.73 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 376 | 97.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 383 | 97.82 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 387 | 97.84 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 388 | 97.86 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 435 | 98.09 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 445 | 98.13 | atmosphere | 1005 | 10 | > th | dose dependent | no | NA | NA |
| 456 | 98.17 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 460 | 98.18 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 482 | 98.30 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 503 | 98.40 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 514 | 98.44 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 545 | 98.57 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 548 | 98.59 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 9 | NA |
| 549 | 98.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 578 | 98.76 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 606 | 98.86 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 631 | 98.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 681 | 99.21 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 726 | 99.46 | humidity | 80 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 733 | 99.48 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 742 | 99.53 | humidity | 70 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 759 | 99.62 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 792 | 99.81 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 825 | 99.95 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 6 | NA |
| 841 | 99.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 862 | 100.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 874 | 100.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 898 | 100.30 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 908 | 100.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 917 | 100.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 921 | 100.43 | humidity | 50 | 270 | > th | dose dependent | sin | 9 | NA |
| 942 | 100.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 950 | 100.58 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 967 | 100.64 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 968 | 100.65 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 989 | 100.76 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 996 | 100.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 5 |