Os06g0157800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CG7224 (Fragment).
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Os06g0157800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CG7224 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.33 | 0.309 | 10.7 | -1.32 | 0.448 | 0.558 | 0.571 | -1.04 | -0.693 | 12.5 | 10.05 | 1580 | -- | -- |
| 44.73 | 0.311 | 10.7 | -1.17 | 0.477 | 0.505 | 0.474 | -- | -0.631 | 12.4 | 11.53 | 1614 | -- | -- |
| 44.73 | 0.312 | 10.7 | -1.3 | 0.447 | 0.55 | -- | -1.03 | -0.691 | 12.5 | 10.05 | 1576 | -- | -- |
| 45.46 | 0.314 | 10.7 | -1.18 | 0.473 | 0.513 | -- | -- | -0.656 | 12.7 | 10.05 | 1580 | -- | -- |
| 51.51 | 0.336 | 10.7 | -1.07 | -- | 0.402 | -- | 0.38 | -0.49 | -- | 10.05 | 1576 | -- | -- |
| 50.79 | 0.334 | 10.7 | -1.03 | 0.53 | -- | 0.372 | -- | -0.495 | 12.6 | -- | -- | -- | -- |
| 51.38 | 0.336 | 10.7 | -1.01 | 0.529 | -- | -- | -- | -0.493 | 12.7 | -- | -- | -- | -- |
| 48.27 | 0.324 | 10.6 | -0.918 | -- | 0.452 | -- | -- | -0.474 | -- | 5.929 | 101 | -- | -- |
| 72.29 | 0.396 | 10.6 | -- | 0.594 | 0.521 | -- | -- | -0.449 | 12.6 | 29.99 | 7398 | -- | -- |
| 68.92 | 0.388 | 10.7 | -1.03 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 78.46 | 0.414 | 10.6 | -- | 0.545 | -- | -- | -- | -0.38 | 12.8 | -- | -- | -- | -- |
| 74.05 | 0.401 | 10.6 | -- | -- | 0.484 | -- | -- | -0.41 | -- | 6.446 | 85 | -- | -- |
| 97.04 | 0.46 | 10.6 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 2 | 42.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 7 | 42.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 8 | 42.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 9 | 42.55 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 10 | 42.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 16 | 42.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 17 | 42.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 25 | 42.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 27 | 42.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 32 | 42.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 81 | 42.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 97 | 42.85 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 137 | 43.03 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 199 | 43.28 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 205 | 43.29 | humidity | 70 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 251 | 43.45 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 289 | 43.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 295 | 43.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 377 | 43.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 385 | 43.74 | humidity | 70 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 386 | 43.74 | humidity | 70 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 404 | 43.79 | humidity | 70 | 90 | > th | dose dependent | no | NA | NA |
| 425 | 43.83 | humidity | 70 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 436 | 43.87 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 448 | 43.89 | humidity | 70 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 460 | 43.91 | humidity | 60 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 461 | 43.91 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 524 | 44.00 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 525 | 44.00 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 571 | 44.04 | humidity | 70 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 601 | 44.07 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 669 | 44.11 | humidity | 70 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 725 | 44.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 727 | 44.20 | humidity | 70 | 30 | > th | dose dependent | sin | 0 | NA |
| 728 | 44.20 | humidity | 80 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 737 | 44.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 763 | 44.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 767 | 44.26 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 844 | 44.32 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 845 | 44.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 846 | 44.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 870 | 44.36 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 931 | 44.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 933 | 44.40 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 942 | 44.41 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 943 | 44.41 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 961 | 44.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 8 |
| 980 | 44.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 982 | 44.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 2 |