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Os06g0155500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.8 (0.0332) R2 : 0.813
β1 : -1.36 (0.122) R2dD : 0.054 R2D : 0.0224
β2 : 3.59 (0.0855) R2dC : 0.736 R2C : 0.717
β3 : 1.01 (0.128) R2dE : 0.0273 R2E : 0.0117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.675 (0.0726) R2dN8 : 0.0537 R2N8 : -0.00221
σ : 0.616
deviance : 175.14
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C
peak time of C : 6.97
E
wheather : radiation
threshold : 11.05
memory length : 1444
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.07

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.81 0.579 8.81 -1.54 3.61 1.1 2.17 -2.27 -0.729 6.98 10.46 1442 11 1.03
164.03 0.596 8.81 -1.37 3.6 1.07 2.24 -- -0.704 6.99 10.64 1444 10.9 1.03
164.03 0.596 8.81 -1.5 3.61 1.1 -- -2.25 -0.729 6.98 10.45 1442 11 1.03
175.14 0.616 8.8 -1.36 3.59 1.01 -- -- -0.675 6.97 11.05 1444 11 1.07
846.75 1.36 8.82 -1.36 -- 1.54 -- -2.11 -0.572 -- 11.19 1471 10.9 0.967
186.66 0.64 8.75 -1.26 3.62 -- 2.16 -- -0.533 7 -- -- -- --
198.82 0.66 8.76 -1.22 3.63 -- -- -- -0.539 6.97 -- -- -- --
849.83 1.36 8.84 -1.26 -- 1.66 -- -- -0.554 -- 10.33 1488 10.9 0.719
224.71 0.698 8.79 -- 3.63 0.972 -- -- -0.667 6.96 11.2 1444 11.3 1.04
889.83 1.39 8.84 -1.15 -- -- -- -- -0.471 -- -- -- -- --
238.34 0.722 8.73 -- 3.61 -- -- -- -0.402 6.99 -- -- -- --
891.66 1.39 8.84 -- -- 1.52 -- -- -0.413 -- 10.02 1487 10.9 0.771
924.73 1.42 8.81 -- -- -- -- -- -0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.43 radiation 10 1440 > th dose independent rect. 11 1
2 159.12 radiation 1 270 < th dose independent rect. 9 4
3 159.12 radiation 1 270 < th dose dependent rect. 9 4
4 159.39 radiation 1 1440 < th dose independent rect. 11 1
5 159.39 radiation 1 1440 < th dose dependent rect. 11 1
6 159.56 radiation 1 90 < th dose dependent rect. 8 8
10 159.90 radiation 20 1440 < th dose dependent rect. 11 1
11 159.95 wind 1 1440 < th dose independent rect. 6 1
14 160.33 radiation 1 90 < th dose independent rect. 7 9
16 160.53 radiation 1 1440 < th dose independent rect. 9 3
17 160.53 radiation 1 1440 < th dose dependent rect. 9 3
22 160.95 wind 1 1440 > th dose independent rect. 6 1
31 161.61 atmosphere 995 43200 < th dose dependent rect. 13 13
33 161.79 radiation 10 10 > th dose independent sin 18 NA
35 161.80 atmosphere 995 43200 < th dose dependent sin 16 NA
39 161.97 radiation 10 1440 < th dose dependent rect. 13 1
45 162.08 atmosphere 995 43200 < th dose dependent rect. 12 16
52 162.28 humidity 80 270 > th dose dependent rect. 12 1
53 162.35 radiation 20 10 < th dose dependent sin 19 NA
59 162.57 atmosphere 995 43200 > th dose independent rect. 17 20
71 162.81 humidity 80 270 > th dose independent rect. 12 1
76 162.84 radiation 1 10 < th dose dependent rect. 7 9
77 162.85 atmosphere 995 43200 < th dose dependent rect. 14 19
83 162.94 atmosphere 995 43200 < th dose independent rect. 17 19
89 163.11 atmosphere 995 43200 > th dose independent rect. 16 22
106 163.33 humidity 60 10 > th dose dependent sin 20 NA
112 163.42 atmosphere 995 43200 > th dose independent rect. 21 19
134 163.65 radiation 1 10 < th dose dependent rect. 11 5
146 163.73 atmosphere 995 43200 < th dose independent rect. 21 19
160 163.87 radiation 1 1440 > th dose independent rect. 9 5
163 163.90 radiation 1 10 < th dose independent rect. 6 10
185 164.07 wind 1 1440 < th dose dependent rect. 6 1
189 164.13 radiation 10 90 > th dose independent sin 21 NA
208 164.28 radiation 10 90 > th dose independent rect. 10 21
219 164.38 radiation 10 90 > th dose independent rect. 10 8
241 164.47 radiation 1 1440 < th dose independent rect. 13 1
278 164.75 radiation 10 90 > th dose independent rect. 11 5
285 164.84 radiation 1 10 < th dose independent rect. 11 5
292 164.91 humidity 60 10 > th dose dependent rect. 7 13
294 164.93 atmosphere 995 43200 < th dose independent no NA NA
299 164.93 atmosphere 995 43200 < th dose independent rect. 7 23
303 164.95 atmosphere 995 43200 > th dose independent sin 6 NA
346 165.15 humidity 60 14400 < th dose independent rect. 6 1
348 165.15 humidity 60 14400 < th dose independent rect. 20 1
350 165.15 radiation 20 14400 > th dose independent rect. 17 1
401 165.15 humidity 60 14400 < th dose dependent rect. 6 1
403 165.15 humidity 60 14400 < th dose dependent rect. 20 1
405 165.15 radiation 20 14400 > th dose dependent rect. 17 1
484 165.34 humidity 60 14400 > th dose independent rect. 21 11
514 165.48 radiation 10 10 > th dose independent rect. 10 21
518 165.52 humidity 90 10 < th dose dependent rect. 10 19
521 165.54 humidity 90 10 < th dose dependent rect. 10 21
534 165.60 atmosphere 995 43200 > th dose independent no NA NA
535 165.60 humidity 60 14400 > th dose independent rect. 24 8
541 165.62 atmosphere 995 43200 > th dose independent rect. 7 23
560 165.67 humidity 90 10 < th dose dependent rect. 10 16
566 165.70 radiation 1 30 > th dose dependent sin 17 NA
567 165.71 humidity 60 14400 > th dose independent rect. 7 1
568 165.71 radiation 10 10 > th dose independent rect. 10 8
588 165.74 atmosphere 995 43200 > th dose independent rect. 4 23
648 166.03 radiation 10 1440 < th dose dependent rect. 9 9
681 166.17 humidity 90 10 < th dose dependent rect. 10 9
701 166.24 humidity 70 10 < th dose independent rect. 11 8
724 166.31 atmosphere 995 43200 < th dose independent sin 7 NA
733 166.32 humidity 90 720 < th dose dependent rect. 11 4
745 166.44 atmosphere 995 43200 > th dose independent rect. 13 23
750 166.47 humidity 90 10 < th dose dependent sin 20 NA
762 166.52 radiation 1 90 > th dose dependent rect. 11 20
770 166.56 radiation 20 90 < th dose dependent rect. 5 23
822 166.74 humidity 80 1440 < th dose independent rect. 11 3
830 166.77 humidity 70 10 > th dose independent sin 20 NA
843 166.81 radiation 10 1440 < th dose dependent rect. 9 13
844 166.81 radiation 10 1440 < th dose dependent rect. 9 15
846 166.82 radiation 10 1440 < th dose dependent rect. 11 13
852 166.83 radiation 10 1440 < th dose dependent rect. 11 10
886 166.93 radiation 20 90 < th dose dependent rect. 7 16
898 166.98 radiation 10 10 < th dose independent sin 17 NA
911 166.99 radiation 20 90 < th dose dependent rect. 7 13
943 167.07 radiation 1 90 > th dose dependent rect. 11 8
945 167.07 atmosphere 995 43200 < th dose dependent rect. 14 10
976 167.20 wind 3 4320 > th dose independent rect. 8 1
978 167.21 humidity 80 1440 < th dose independent rect. 8 6