Os06g0154900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0154900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.18 | 0.249 | 11.6 | 0.62 | 0.701 | 0.437 | 0.185 | 1.45 | 0.253 | 21.6 | 19.92 | 4510 | -- | -- |
| 29.17 | 0.252 | 11.6 | 0.724 | 0.778 | 0.501 | 0.107 | -- | 0.31 | 21.5 | 21.56 | 5374 | -- | -- |
| 28.31 | 0.248 | 11.6 | 0.62 | 0.701 | 0.438 | -- | 1.47 | 0.254 | 21.6 | 19.92 | 4517 | -- | -- |
| 29.21 | 0.252 | 11.6 | 0.713 | 0.771 | 0.468 | -- | -- | 0.307 | 21.7 | 21.86 | 5410 | -- | -- |
| 46.78 | 0.32 | 11.6 | 0.731 | -- | 0.473 | -- | -0.0596 | 0.201 | -- | 19.92 | 4517 | -- | -- |
| 34.29 | 0.275 | 11.6 | 0.739 | 0.713 | -- | 0.236 | -- | 0.214 | 21.6 | -- | -- | -- | -- |
| 34.5 | 0.275 | 11.6 | 0.73 | 0.712 | -- | -- | -- | 0.213 | 21.6 | -- | -- | -- | -- |
| 46.8 | 0.32 | 11.6 | 0.735 | -- | 0.472 | -- | -- | 0.201 | -- | 19.92 | 4517 | -- | -- |
| 39.53 | 0.293 | 11.6 | -- | 0.72 | 0.507 | -- | -- | 0.304 | 21.6 | 29.47 | 25250 | -- | -- |
| 64.48 | 0.375 | 11.6 | 0.736 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 48.55 | 0.326 | 11.6 | -- | 0.713 | -- | -- | -- | 0.132 | 21.7 | -- | -- | -- | -- |
| 61.05 | 0.365 | 11.6 | -- | -- | 0.473 | -- | -- | 0.12 | -- | 19.92 | 4517 | -- | -- |
| 78.77 | 0.414 | 11.6 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.21 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 2 | 27.54 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 3 | 27.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 4 | 27.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 5 | 27.59 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 6 | 27.68 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 11 | 27.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 22 | 27.82 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 66 | 27.87 | radiation | 40 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 72 | 27.88 | radiation | 40 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 80 | 27.89 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 97 | 27.91 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 103 | 27.92 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 119 | 27.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 123 | 27.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 220 | 28.05 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 227 | 28.05 | radiation | 40 | 14400 | > th | dose dependent | sin | 16 | NA |
| 335 | 28.12 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 369 | 28.13 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 371 | 28.13 | radiation | 40 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 420 | 28.15 | radiation | 40 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 467 | 28.16 | radiation | 40 | 14400 | > th | dose dependent | no | NA | NA |
| 643 | 28.17 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 810 | 28.22 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 840 | 28.22 | radiation | 40 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 847 | 28.22 | radiation | 40 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 919 | 28.23 | radiation | 40 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 980 | 28.24 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |