Os06g0154800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0154800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.13 | 0.226 | 10.3 | 0.322 | 0.574 | 0.775 | 0.402 | 1.43 | 0.173 | 5.18 | -3.025 | 954 | -- | -- |
| 24.25 | 0.229 | 10.3 | 0.0153 | 0.523 | 0.735 | 0.651 | -- | 0.0872 | 4.13 | 14.22 | 1407 | -- | -- |
| 23.47 | 0.226 | 10.3 | 0.322 | 0.57 | 0.787 | -- | 1.44 | 0.169 | 5.35 | 2.84 | 976 | -- | -- |
| 25.19 | 0.234 | 10.3 | 0.0324 | 0.529 | 0.775 | -- | -- | 0.0915 | 5.08 | 10.57 | 1130 | -- | -- |
| 37.75 | 0.286 | 10.3 | 0.298 | -- | 0.866 | -- | 1.33 | 0.158 | -- | 5.872 | 1200 | -- | -- |
| 33.26 | 0.27 | 10.3 | 0.269 | 0.564 | -- | 0.732 | -- | 0.23 | 4 | -- | -- | -- | -- |
| 34.58 | 0.275 | 10.3 | 0.261 | 0.577 | -- | -- | -- | 0.225 | 4.4 | -- | -- | -- | -- |
| 39.22 | 0.292 | 10.3 | 0.0136 | -- | 0.881 | -- | -- | 0.0821 | -- | 13.95 | 1224 | -- | -- |
| 25.22 | 0.234 | 10.3 | -- | 0.526 | 0.787 | -- | -- | 0.0856 | 5.04 | 10.39 | 1141 | -- | -- |
| 52.45 | 0.338 | 10.3 | 0.283 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 36.37 | 0.282 | 10.3 | -- | 0.582 | -- | -- | -- | 0.196 | 4.39 | -- | -- | -- | -- |
| 39.23 | 0.292 | 10.3 | -- | -- | 0.886 | -- | -- | 0.0799 | -- | 10.93 | 1224 | -- | -- |
| 54.57 | 0.345 | 10.3 | -- | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 4 | 22.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 19 | 22.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 23 | 23.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 77 | 23.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 83 | 23.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 98 | 23.35 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 153 | 23.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 260 | 23.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 269 | 23.54 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 270 | 23.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 271 | 23.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 273 | 23.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 292 | 23.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 297 | 23.55 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 320 | 23.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 323 | 23.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 486 | 23.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 499 | 23.61 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 672 | 23.67 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 824 | 23.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 883 | 23.76 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |