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Os06g0152600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.4) R2 : 0.874
β1 : -8.52 (1.22) R2dD : 1.11 R2D : -2.7
β2 : 4.81 (0.089) R2dC : 0.812 R2C : -0.697
β3 : -108 (16.3) R2dE : 70.7 R2E : -69.9
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -323 (49.6) R2dD*E : 67.3 R2D*E : -68.1
γ1 : -0.75 (0.0806) R2dN8 : 0.0326 R2N8 : -1.86
σ : 0.7
deviance : 226.07
__
_____
C
peak time of C : 11.4
E
wheather : radiation
threshold : 1.266
memory length : 1330
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.899

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.21 0.7 5.46 -8.53 4.8 -108 -0.971 -323 -0.749 11.4 1.135 1364 11 0.862
55728.56 11 5.87 -8.71 4.62 -98 -1.01 -- -0.848 11.5 4.03 1213 10.9 0.885
226.07 0.7 5.47 -8.52 4.81 -108 -- -323 -0.75 11.4 1.266 1330 11 0.899
290.25 0.799 8.05 -0.305 4.83 -0.181 -- -- -0.65 11.5 7.173 3 11.5 0.483
1655.93 1.9 5.81 -8.04 -- -109 -- -323 -0.821 -- 1.217 1240 11 0.85
285.11 0.792 8.05 -0.261 4.82 -- -1.1 -- -0.645 11.5 -- -- -- --
290.31 0.798 8.05 -0.306 4.83 -- -- -- -0.649 11.5 -- -- -- --
1067.31 1.53 8.03 -0.291 -- 2.97 -- -- -0.115 -- 140 45 9.4 3.37
290.96 0.794 8.06 -- 4.92 -0.19 -- -- -0.667 11.5 59.98 9 11.6 0.4
1752.29 1.96 8.16 -0.436 -- -- -- -- -0.702 -- -- -- -- --
292.77 0.8 8.04 -- 4.83 -- -- -- -0.615 11.5 -- -- -- --
377.36 0.905 8.09 -- -- 4.52 -- -- -0.188 -- 167.4 219 4.58 11.2
1757.3 1.96 8.15 -- -- -- -- -- -0.654 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.59 radiation 1.0 1440 < th dose dependent rect. 12 4
5 229.05 radiation 1.0 1440 < th dose independent rect. 11 1
6 229.05 radiation 1.0 1440 < th dose dependent rect. 11 1
8 229.54 precipitation 0.1 270 > th dose dependent rect. 2 2
9 229.57 precipitation 0.1 270 > th dose independent rect. 2 2
12 231.81 atmosphere 1005.0 720 < th dose independent rect. 19 5
13 231.94 radiation 1.0 1440 > th dose independent rect. 8 7
15 232.27 radiation 1.0 1440 < th dose independent rect. 13 2
20 232.52 radiation 1.0 1440 < th dose independent rect. 10 5
29 233.18 atmosphere 1005.0 720 < th dose independent rect. 20 1
35 233.83 radiation 1.0 1440 > th dose independent rect. 13 2
50 235.13 temperature 20.0 90 > th dose independent rect. 1 5
72 235.83 temperature 20.0 10 > th dose independent rect. 1 5
84 237.34 radiation 10.0 720 < th dose dependent rect. 14 14
105 239.60 atmosphere 1005.0 270 < th dose dependent rect. 23 7
114 240.11 radiation 40.0 720 < th dose dependent rect. 15 6
121 240.72 radiation 10.0 720 < th dose dependent rect. 14 6
129 241.05 radiation 30.0 720 < th dose dependent rect. 15 13
130 241.14 radiation 20.0 1440 < th dose dependent rect. 11 2
140 241.64 atmosphere 1005.0 10 < th dose dependent rect. 24 8
155 242.11 humidity 50.0 270 > th dose dependent rect. 15 13
160 242.31 radiation 10.0 720 < th dose independent rect. 15 13
164 242.49 wind 1.0 270 < th dose independent rect. 23 3
169 242.65 wind 1.0 270 < th dose independent rect. 3 1
181 243.20 temperature 20.0 270 > th dose independent rect. 1 1
219 244.11 radiation 10.0 720 < th dose independent rect. 15 5
225 244.29 atmosphere 1005.0 30 < th dose dependent rect. 19 13
231 244.43 atmosphere 1005.0 30 < th dose dependent sin 9 NA
245 244.72 radiation 1.0 90 < th dose independent rect. 23 23
268 245.03 wind 1.0 720 < th dose independent rect. 23 1
290 245.55 atmosphere 1005.0 270 < th dose dependent rect. 1 2
295 245.80 radiation 20.0 1440 < th dose independent rect. 11 2
321 246.19 radiation 1.0 1440 > th dose independent rect. 9 1
343 246.45 wind 7.0 720 < th dose independent rect. 20 13
346 246.53 radiation 1.0 90 < th dose dependent rect. 23 23
365 246.75 wind 1.0 270 < th dose independent rect. 22 6
367 246.76 radiation 1.0 90 < th dose independent rect. 14 17
374 246.83 radiation 30.0 720 < th dose independent rect. 15 6
383 246.91 wind 7.0 720 < th dose independent rect. 21 11
384 246.94 radiation 1.0 90 < th dose independent rect. 24 21
414 247.51 radiation 1.0 90 < th dose dependent rect. 24 21
440 247.89 radiation 10.0 1440 < th dose dependent rect. 10 12
459 248.00 wind 7.0 4320 > th dose independent rect. 17 2
541 248.63 wind 9.0 43200 < th dose independent rect. 24 2
564 248.74 wind 5.0 720 < th dose independent rect. 21 2
629 249.27 wind 7.0 720 < th dose independent rect. 20 5
656 249.47 radiation 1.0 90 > th dose independent no NA NA
657 249.47 radiation 1.0 90 > th dose independent rect. 4 15
709 249.54 radiation 1.0 90 < th dose independent no NA NA
710 249.56 wind 1.0 270 < th dose independent rect. 9 19
714 249.62 radiation 1.0 720 > th dose independent rect. 12 18
715 249.63 wind 1.0 1440 > th dose independent rect. 23 1
749 249.87 wind 7.0 4320 < th dose independent rect. 17 2
760 249.98 precipitation 0.1 270 < th dose independent rect. 2 23
761 249.98 precipitation 0.1 270 < th dose dependent rect. 2 23
787 250.31 radiation 10.0 1440 < th dose dependent sin 19 NA
797 250.42 temperature 10.0 720 > th dose dependent rect. 12 4
802 250.46 temperature 30.0 270 < th dose independent rect. 16 12
806 250.48 wind 1.0 270 < th dose dependent rect. 23 3
829 250.66 temperature 10.0 720 > th dose dependent rect. 13 11
843 250.82 radiation 1.0 90 < th dose independent rect. 17 23
864 250.90 radiation 1.0 30 < th dose independent rect. 1 17
874 250.95 atmosphere 1005.0 90 < th dose dependent rect. 3 4
892 251.02 precipitation 0.1 270 < th dose independent rect. 13 11
893 251.02 precipitation 0.1 720 < th dose independent rect. 12 20
895 251.02 precipitation 0.1 270 < th dose dependent rect. 13 11
896 251.02 precipitation 0.1 720 < th dose dependent rect. 12 20
907 251.09 temperature 20.0 10 > th dose independent rect. 20 10
960 251.48 atmosphere 1005.0 720 > th dose independent rect. 21 1
977 251.54 radiation 1.0 90 < th dose dependent rect. 14 17