Os06g0151800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0151800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 337.18 | 0.863 | 4.67 | 2.08 | 0.679 | 2.2 | 1.79 | -0.738 | 0.0341 | 19.2 | 1011 | 1206 | -- | -- |
| 337.5 | 0.856 | 4.67 | 2.05 | 0.682 | 2.45 | 1.71 | -- | 0.0279 | 19.2 | 1011 | 1213 | -- | -- |
| 343.13 | 0.863 | 4.66 | 2.03 | 0.731 | 2.31 | -- | -0.484 | 0.0403 | 18.2 | 1011 | 1193 | -- | -- |
| 343.24 | 0.863 | 4.67 | 2.02 | 0.725 | 2.47 | -- | -- | 0.0312 | 18.1 | 1011 | 1196 | -- | -- |
| 370.13 | 0.896 | 4.65 | 2.03 | -- | 2.41 | -- | -0.338 | 0.0295 | -- | 1011 | 1234 | -- | -- |
| 370.82 | 0.903 | 4.69 | 1.86 | 0.691 | -- | 1.95 | -- | -0.0766 | 19.2 | -- | -- | -- | -- |
| 376.45 | 0.909 | 4.69 | 1.83 | 0.761 | -- | -- | -- | -0.0668 | 17.8 | -- | -- | -- | -- |
| 370.22 | 0.896 | 4.65 | 2.01 | -- | 2.5 | -- | -- | 0.0249 | -- | 1011 | 1232 | -- | -- |
| 447.15 | 0.985 | 4.73 | -- | 0.722 | 2.23 | -- | -- | -0.233 | 18.2 | 1013 | 1308 | -- | -- |
| 406.44 | 0.942 | 4.68 | 1.81 | -- | -- | -- | -- | -0.0846 | -- | -- | -- | -- | -- |
| 465.08 | 1.01 | 4.73 | -- | 0.733 | -- | -- | -- | -0.271 | 17.9 | -- | -- | -- | -- |
| 473.73 | 1.01 | 4.71 | -- | -- | 2.2 | -- | -- | -0.241 | -- | 1013 | 1329 | -- | -- |
| 492.9 | 1.04 | 4.72 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.32 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 12 |
| 4 | 334.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 8 |
| 9 | 334.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 15 | 335.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 21 | 335.33 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 42 | 335.83 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 46 | 335.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 52 | 336.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 55 | 336.09 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 9 | 23 |
| 58 | 336.14 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 90 | 336.54 | atmosphere | 1015 | 720 | < th | dose independent | sin | 9 | NA |
| 105 | 336.65 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 107 | 336.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 113 | 336.75 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 20 | 15 |
| 185 | 337.47 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 6 | 23 |
| 188 | 337.50 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 233 | 337.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 239 | 337.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 285 | 338.22 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 295 | 338.28 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 299 | 338.32 | temperature | 15 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 346 | 338.57 | atmosphere | 1010 | 1440 | > th | dose dependent | sin | 17 | NA |
| 351 | 338.60 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 11 | 23 |
| 378 | 338.72 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 396 | 338.82 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 414 | 338.89 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 430 | 338.95 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 13 |
| 435 | 338.96 | wind | 1 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 452 | 339.03 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 6 | 18 |
| 488 | 339.12 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 518 | 339.20 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 519 | 339.21 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 546 | 339.23 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 556 | 339.25 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 589 | 339.31 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 12 | NA |
| 617 | 339.36 | radiation | 1 | 270 | < th | dose independent | rect. | 10 | 5 |
| 626 | 339.36 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 631 | 339.37 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 648 | 339.39 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 18 | 17 |
| 707 | 339.48 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 716 | 339.51 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 7 |
| 792 | 339.66 | wind | 3 | 30 | > th | dose independent | rect. | 8 | 10 |
| 807 | 339.70 | wind | 1 | 90 | > th | dose dependent | sin | 3 | NA |
| 813 | 339.71 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 842 | 339.77 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 845 | 339.78 | wind | 5 | 30 | < th | dose independent | rect. | 13 | 22 |
| 848 | 339.79 | temperature | 15 | 720 | > th | dose independent | sin | 1 | NA |
| 875 | 339.84 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 23 | 9 |
| 917 | 339.94 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 5 |
| 939 | 339.98 | wind | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 963 | 340.04 | temperature | 15 | 4320 | > th | dose independent | rect. | 12 | 2 |