Os06g0149600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os06g0149600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.37 | 0.271 | 9.08 | 1.84 | 0.417 | -0.901 | 0.226 | 0.969 | 0.565 | 20.3 | 19.99 | 1545 | -- | -- |
| 34.22 | 0.272 | 9.11 | 1.58 | 0.4 | -0.899 | 0.24 | -- | 0.482 | 20.6 | 18.29 | 1440 | -- | -- |
| 33.52 | 0.27 | 9.08 | 1.83 | 0.414 | -0.901 | -- | 0.972 | 0.565 | 20.4 | 19.99 | 1540 | -- | -- |
| 34.3 | 0.273 | 9.11 | 1.56 | 0.402 | -0.914 | -- | -- | 0.486 | 20.8 | 18.5 | 1413 | -- | -- |
| 42.88 | 0.305 | 9.07 | 1.8 | -- | -0.897 | -- | 0.913 | 0.553 | -- | 19.67 | 1467 | -- | -- |
| 56.25 | 0.352 | 9.16 | 1.23 | 0.407 | -- | 0.26 | -- | 0.284 | 20.1 | -- | -- | -- | -- |
| 56.44 | 0.352 | 9.16 | 1.22 | 0.406 | -- | -- | -- | 0.284 | 20.2 | -- | -- | -- | -- |
| 43.54 | 0.307 | 9.1 | 1.56 | -- | -0.914 | -- | -- | 0.486 | -- | 18.3 | 1460 | -- | -- |
| 88.87 | 0.439 | 9.18 | -- | 0.554 | -0.522 | -- | -- | 0.224 | 20.7 | 21.9 | 826 | -- | -- |
| 65.52 | 0.378 | 9.15 | 1.22 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 95.71 | 0.458 | 9.19 | -- | 0.4 | -- | -- | -- | 0.148 | 20.4 | -- | -- | -- | -- |
| 98.06 | 0.461 | 9.16 | -- | -- | -0.399 | -- | -- | 0.218 | -- | 22.19 | 1432 | -- | -- |
| 104.62 | 0.477 | 9.18 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 4 | 30.60 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 30.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 6 | 30.62 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 7 | 30.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 10 | 30.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 13 | 30.83 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 26 | 31.03 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 36 | 31.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 37 | 31.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 38 | 31.76 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 43 | 31.84 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 57 | 32.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 58 | 32.08 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 59 | 32.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 73 | 32.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 79 | 32.19 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 158 | 32.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 159 | 32.84 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 167 | 32.86 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 180 | 32.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 187 | 32.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 188 | 32.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 211 | 32.92 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 294 | 33.02 | wind | 9.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 324 | 33.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 366 | 33.12 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 450 | 33.22 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 477 | 33.27 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 560 | 33.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 572 | 33.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 613 | 33.43 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 647 | 33.46 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 652 | 33.47 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 695 | 33.52 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 748 | 33.57 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 764 | 33.60 | wind | 9.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 781 | 33.63 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 804 | 33.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 814 | 33.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 818 | 33.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 845 | 33.70 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 869 | 33.71 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 900 | 33.75 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 913 | 33.76 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 917 | 33.77 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 932 | 33.78 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 21 |