Os06g0149500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0149500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.61 | 0.299 | 10 | 0.325 | 0.00418 | 1.11 | 0.745 | -1.26 | 0.134 | 13.4 | 24.22 | 36 | -- | -- |
| 41.21 | 0.299 | 10 | 0.494 | 0.0179 | 1.01 | 0.531 | -- | 0.176 | 12.9 | 24.1 | 33 | -- | -- |
| 42.36 | 0.303 | 10 | 0.444 | 0.0355 | 1.08 | -- | -0.683 | 0.17 | 9.21 | 24.57 | 43 | -- | -- |
| 42.19 | 0.303 | 10 | 0.497 | 0.0817 | 1.07 | -- | -- | 0.173 | 7.12 | 24.1 | 45 | -- | -- |
| 42.41 | 0.303 | 10 | 0.464 | -- | 1.07 | -- | -0.332 | 0.167 | -- | 24.2 | 34 | -- | -- |
| 57.48 | 0.355 | 9.98 | 0.655 | 0.396 | -- | 0.861 | -- | 0.294 | 14.5 | -- | -- | -- | -- |
| 60.15 | 0.363 | 9.98 | 0.678 | 0.399 | -- | -- | -- | 0.3 | 14.6 | -- | -- | -- | -- |
| 42.46 | 0.303 | 10 | 0.504 | -- | 1.04 | -- | -- | 0.177 | -- | 24.12 | 32 | -- | -- |
| 47.99 | 0.323 | 10 | -- | 0.1 | 1.17 | -- | -- | 0.0709 | 5.55 | 22.58 | 56 | -- | -- |
| 69.47 | 0.389 | 9.98 | 0.661 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 72.27 | 0.398 | 10 | -- | 0.386 | -- | -- | -- | 0.224 | 14.6 | -- | -- | -- | -- |
| 48.29 | 0.324 | 10 | -- | -- | 1.14 | -- | -- | 0.071 | -- | 22.31 | 32 | -- | -- |
| 81 | 0.42 | 10 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 4 | 39.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 9 | 39.89 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 10 | 39.92 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 11 | 39.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 15 | 39.99 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 21 | 40.15 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 23 | 40.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 27 | 40.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 45 | 40.43 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 57 | 40.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 59 | 40.53 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 64 | 40.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 66 | 40.58 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 67 | 40.58 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 74 | 40.61 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 83 | 40.64 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 99 | 40.74 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 125 | 40.82 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 132 | 40.83 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 172 | 40.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 216 | 41.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 256 | 41.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 377 | 41.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 638 | 42.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 675 | 42.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 801 | 42.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 995 | 42.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 15 |