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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0148200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.95 (0.0758) R2 : 0.155
β1 : -2.37 (0.303) R2dD : 0.144 R2D : 0.0506
β2 : 0.675 (0.194) R2dC : 0.023 R2C : 0.0133
β3 : 1.69 (0.42) R2dE : 0.0387 R2E : -0.0165
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.556 (0.165) R2dN8 : 0.0299 R2N8 : 0.0176
σ : 1.41
deviance : 912.92
__
_____
C
peak time of C : 7.43
E
wheather : humidity
threshold : 50.08
memory length : 4550
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
897.92 1.41 4.05 -2.73 0.665 3.25 -0.469 -5.44 -0.492 8.02 49.92 4455 -- --
916.85 1.41 4.03 -2.47 0.651 2.1 -0.239 -- -0.675 7.45 49.98 4736 -- --
897.89 1.4 4.04 -2.69 0.67 3.36 -- -5.47 -0.497 7.62 49.93 4488 -- --
912.92 1.41 3.95 -2.37 0.675 1.69 -- -- -0.556 7.43 50.08 4550 -- --
922 1.41 4.06 -2.68 -- 3.44 -- -5.69 -0.489 -- 49.58 4505 -- --
944.76 1.44 3.98 -1.88 0.666 -- -0.226 -- -0.712 7.33 -- -- -- --
944.84 1.44 3.98 -1.89 0.669 -- -- -- -0.713 7.14 -- -- -- --
937.18 1.43 3.96 -2.37 -- 1.51 -- -- -0.55 -- 50.4 4492 -- --
1007.06 1.48 3.94 -- 0.682 1.49 -- -- -0.442 7.4 63 6879 -- --
968.44 1.45 4 -1.88 -- -- -- -- -0.701 -- -- -- -- --
1038.93 1.51 3.94 -- 0.65 -- -- -- -0.502 7.33 -- -- -- --
1013.28 1.48 3.99 -- -- 1.56 -- -- -0.671 -- 63.19 15766 -- --
1061.37 1.52 3.95 -- -- -- -- -- -0.493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 890.15 temperature 25 720 > th dose dependent rect. 21 1
2 890.71 humidity 50 1440 < th dose independent rect. 16 1
3 890.71 humidity 50 1440 < th dose dependent rect. 16 1
4 891.13 temperature 30 4320 > th dose dependent rect. 18 1
19 893.86 wind 3 10 < th dose dependent rect. 3 7
20 894.18 wind 1 10 < th dose independent rect. 4 9
23 894.93 wind 3 10 < th dose dependent rect. 3 5
24 895.09 wind 3 90 < th dose dependent rect. 3 2
26 895.62 wind 1 10 < th dose independent rect. 4 6
30 896.40 humidity 50 1440 > th dose independent rect. 16 1
34 897.23 humidity 50 4320 < th dose independent sin 12 NA
37 897.76 humidity 50 4320 < th dose independent rect. 15 20
43 898.13 temperature 30 720 < th dose independent rect. 18 8
44 898.17 humidity 90 90 > th dose dependent rect. 4 1
65 898.35 humidity 50 4320 > th dose independent sin 12 NA
69 898.62 humidity 50 4320 > th dose independent rect. 15 5
70 898.63 humidity 50 4320 > th dose independent rect. 15 10
71 898.63 humidity 50 4320 > th dose independent rect. 15 12
75 898.65 humidity 50 4320 > th dose independent rect. 15 19
81 898.80 wind 1 90 < th dose independent rect. 4 1
84 898.88 wind 3 43200 > th dose independent rect. 2 1
85 898.88 humidity 50 4320 > th dose independent rect. 15 17
87 898.89 temperature 30 720 > th dose dependent rect. 18 1
102 898.93 humidity 50 4320 > th dose independent rect. 13 4
104 899.00 humidity 50 4320 < th dose independent rect. 16 22
107 899.17 temperature 15 270 > th dose independent rect. 14 15
129 899.64 wind 3 43200 < th dose independent rect. 2 1
130 899.66 humidity 50 4320 < th dose independent rect. 11 6
137 899.76 humidity 60 4320 < th dose dependent rect. 16 17
139 899.79 atmosphere 1005 90 > th dose independent rect. 3 2
172 900.18 humidity 60 4320 < th dose dependent rect. 16 3
174 900.25 humidity 70 4320 < th dose dependent rect. 18 1
196 900.63 humidity 70 4320 < th dose dependent rect. 18 14
219 900.87 humidity 50 4320 > th dose independent rect. 13 23
222 900.96 radiation 20 1440 > th dose independent rect. 16 15
223 900.98 wind 5 10 < th dose dependent rect. 2 17
229 901.18 humidity 70 4320 < th dose dependent rect. 18 3
242 901.30 humidity 50 4320 > th dose independent rect. 11 6
246 901.36 wind 9 14400 < th dose independent sin 7 NA
274 901.76 radiation 20 1440 < th dose independent rect. 16 16
275 901.77 wind 9 14400 < th dose independent rect. 18 20
276 901.83 radiation 10 1440 > th dose dependent rect. 16 15
281 901.96 wind 3 270 < th dose dependent rect. 1 4
297 902.06 humidity 50 4320 > th dose independent rect. 24 17
298 902.08 humidity 50 4320 > th dose independent rect. 2 15
300 902.12 humidity 50 4320 > th dose independent rect. 19 22
312 902.19 humidity 50 4320 > th dose independent rect. 4 13
325 902.21 humidity 50 4320 > th dose independent rect. 6 11
343 902.60 humidity 60 4320 < th dose dependent sin 12 NA
346 902.66 wind 7 14400 > th dose dependent rect. 20 18
349 902.71 wind 1 10 < th dose independent rect. 4 2
353 902.74 radiation 20 1440 > th dose independent rect. 16 1
382 902.78 humidity 90 90 > th dose independent rect. 4 1
385 902.80 radiation 10 1440 > th dose dependent rect. 16 1
388 902.85 atmosphere 1010 30 < th dose independent rect. 10 16
389 902.90 wind 7 14400 > th dose dependent sin 6 NA
391 902.91 humidity 50 4320 > th dose independent rect. 11 16
392 902.93 temperature 25 720 > th dose independent rect. 21 2
394 902.94 humidity 50 4320 > th dose independent rect. 11 21
398 902.98 humidity 50 4320 > th dose independent rect. 11 18
405 903.04 humidity 50 4320 > th dose independent rect. 11 9
420 903.06 humidity 50 4320 > th dose independent rect. 11 14
451 903.28 wind 9 14400 > th dose independent rect. 18 20
488 903.46 humidity 50 4320 < th dose independent no NA NA
642 903.84 radiation 20 1440 < th dose independent rect. 16 1
646 903.85 temperature 15 1440 > th dose independent rect. 11 14
654 903.88 humidity 50 4320 > th dose independent rect. 6 21
655 903.88 humidity 50 4320 > th dose independent rect. 4 23
670 903.94 humidity 50 4320 > th dose independent rect. 6 23
672 903.95 humidity 50 4320 > th dose independent rect. 2 23
698 904.01 humidity 50 4320 > th dose independent rect. 4 16
709 904.03 humidity 50 4320 > th dose independent no NA NA
730 904.08 radiation 20 1440 < th dose independent rect. 16 11
794 904.18 humidity 60 4320 > th dose independent rect. 17 10
812 904.24 humidity 60 4320 > th dose independent rect. 17 8
821 904.28 radiation 1 720 > th dose independent rect. 18 1
834 904.29 wind 9 14400 > th dose independent sin 7 NA
836 904.30 temperature 25 270 < th dose independent rect. 24 5
843 904.38 radiation 20 1440 < th dose independent rect. 16 9
858 904.42 radiation 20 1440 < th dose independent rect. 16 13
860 904.44 radiation 20 1440 < th dose independent rect. 16 4
861 904.45 humidity 60 4320 > th dose independent rect. 17 15
871 904.57 radiation 20 1440 < th dose independent rect. 16 6
879 904.70 temperature 25 90 < th dose independent rect. 3 2
881 904.70 radiation 1 720 > th dose dependent rect. 18 1
896 904.78 wind 5 270 < th dose dependent rect. 24 9
923 905.16 temperature 25 10 < th dose independent rect. 4 2
928 905.24 wind 1 10 > th dose independent sin 3 NA
929 905.25 wind 3 270 < th dose independent rect. 24 9
931 905.28 wind 9 90 < th dose dependent rect. 3 16
964 905.51 atmosphere 995 90 > th dose dependent rect. 3 2
991 906.00 temperature 15 1440 > th dose independent rect. 10 6
992 906.03 temperature 25 270 < th dose independent rect. 1 2
994 906.04 wind 9 270 < th dose dependent rect. 24 18