Os06g0146900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0146900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.13 | 0.666 | 5.27 | -0.133 | 1.23 | 2.57 | -0.545 | 1.05 | -0.496 | 7.01 | 25.7 | 3625 | -- | -- |
| 201.98 | 0.662 | 5.24 | 0.052 | 1.22 | 2.44 | -0.498 | -- | -0.464 | 7.02 | 26.6 | 3626 | -- | -- |
| 201.88 | 0.662 | 5.27 | -0.143 | 1.23 | 2.57 | -- | 1.07 | -0.498 | 7.08 | 25.65 | 3620 | -- | -- |
| 202.62 | 0.663 | 5.24 | 0.0432 | 1.22 | 2.43 | -- | -- | -0.462 | 7.08 | 26.6 | 3620 | -- | -- |
| 267.8 | 0.762 | 5.25 | -0.0469 | -- | 2.55 | -- | -0.276 | -0.421 | -- | 29.89 | 2059 | -- | -- |
| 297.7 | 0.809 | 5.37 | -1.05 | 1.29 | -- | -0.251 | -- | -1.07 | 7.48 | -- | -- | -- | -- |
| 297.87 | 0.808 | 5.37 | -1.06 | 1.29 | -- | -- | -- | -1.07 | 7.51 | -- | -- | -- | -- |
| 227.89 | 0.703 | 5.29 | -0.299 | -- | 3.07 | -- | -- | -0.471 | -- | 30.16 | 534 | -- | -- |
| 202.65 | 0.663 | 5.24 | -- | 1.22 | 2.4 | -- | -- | -0.472 | 7.09 | 26.6 | 3609 | -- | -- |
| 386.33 | 0.918 | 5.4 | -1.04 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 327.4 | 0.846 | 5.35 | -- | 1.28 | -- | -- | -- | -0.949 | 7.57 | -- | -- | -- | -- |
| 229.52 | 0.706 | 5.26 | -- | -- | 3.17 | -- | -- | -0.415 | -- | 30.13 | 535 | -- | -- |
| 414.82 | 0.951 | 5.38 | -- | -- | -- | -- | -- | -0.931 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 18 | 200.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 114 | 201.64 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 222 | 202.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 277 | 202.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 305 | 202.65 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 17 |
| 465 | 203.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 488 | 203.33 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 764 | 204.09 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 900 | 204.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |