Os06g0146700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0146700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 309.45 | 0.827 | 4.94 | 1.44 | 0.913 | -1.62 | 1.39 | 4.61 | 0.24 | 1.62 | 25.41 | 1274 | -- | -- |
| 318.08 | 0.831 | 5.08 | 0.231 | 0.88 | -1.1 | 1.85 | -- | -0.113 | 1.37 | 26.3 | 2678 | -- | -- |
| 315.89 | 0.828 | 4.93 | 1.53 | 0.944 | -1.66 | -- | 5.14 | 0.287 | 2.06 | 24.96 | 1251 | -- | -- |
| 326.39 | 0.841 | 5.1 | 0.169 | 0.866 | -1.05 | -- | -- | -0.119 | 2.19 | 25.99 | 2776 | -- | -- |
| 354.76 | 0.877 | 4.91 | 1.53 | -- | -1.6 | -- | 5.07 | 0.303 | -- | 25 | 1684 | -- | -- |
| 366.5 | 0.897 | 5.11 | -0.109 | 0.708 | -- | 1.37 | -- | -0.157 | 1.51 | -- | -- | -- | -- |
| 372.71 | 0.904 | 5.11 | -0.157 | 0.736 | -- | -- | -- | -0.168 | 2.35 | -- | -- | -- | -- |
| 360.49 | 0.884 | 5.07 | 0.256 | -- | -1.06 | -- | -- | 0.000622 | -- | 25.3 | 6060 | -- | -- |
| 327.31 | 0.843 | 5.1 | -- | 0.874 | -1.02 | -- | -- | -0.149 | 2.17 | 26.1 | 2758 | -- | -- |
| 404.77 | 0.94 | 5.1 | -0.126 | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
| 373.36 | 0.904 | 5.11 | -- | 0.733 | -- | -- | -- | -0.15 | 2.35 | -- | -- | -- | -- |
| 361.63 | 0.886 | 5.04 | -- | -- | -0.998 | -- | -- | 0.119 | -- | 25.32 | 7603 | -- | -- |
| 405.19 | 0.94 | 5.1 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 299.49 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 300.53 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 5 | 301.82 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 6 |
| 12 | 303.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 17 | 304.58 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 20 | 304.83 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 26 | 305.09 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 30 | 305.28 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 38 | 305.61 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 45 | 305.70 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 58 | 305.86 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 82 | 306.37 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 83 | 306.37 | wind | 7.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 97 | 306.48 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 102 | 306.53 | wind | 1.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 103 | 306.55 | wind | 3.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 107 | 306.59 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 141 | 306.92 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 156 | 307.12 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 159 | 307.15 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 180 | 307.41 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 191 | 307.61 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 196 | 307.64 | wind | 3.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 210 | 307.71 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 212 | 307.73 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 230 | 307.85 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 239 | 307.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 249 | 308.03 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 262 | 308.14 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 282 | 308.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 325 | 308.59 | wind | 3.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 328 | 308.59 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 341 | 308.65 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 366 | 308.77 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 393 | 308.91 | humidity | 70.0 | 720 | < th | dose independent | sin | 13 | NA |
| 394 | 308.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 468 | 309.32 | humidity | 70.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 490 | 309.38 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 525 | 309.55 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 651 | 310.17 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 654 | 310.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 655 | 310.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 693 | 310.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 715 | 310.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 723 | 310.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 752 | 310.66 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 755 | 310.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 768 | 310.73 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 778 | 310.78 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 779 | 310.80 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 805 | 310.86 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 841 | 311.03 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 897 | 311.34 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 912 | 311.38 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 944 | 311.49 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 987 | 311.60 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 989 | 311.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 990 | 311.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 6 |