Os06g0146200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Gamma-crystallin related domain containing protein.
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Os06g0146200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Gamma-crystallin related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.05 | 0.436 | 7.2 | -0.585 | 0.725 | -1.66 | 0.878 | -1.73 | 0.13 | 4.51 | 21.66 | 42 | -- | -- |
| 88.24 | 0.441 | 7.22 | -0.689 | 0.707 | -1.18 | 0.516 | -- | 0.0993 | 4.58 | 22.5 | 42 | -- | -- |
| 87.65 | 0.439 | 7.21 | -0.606 | 0.724 | -1.4 | -- | -1.05 | 0.114 | 4.53 | 22.21 | 45 | -- | -- |
| 88.91 | 0.442 | 7.22 | -0.694 | 0.71 | -1.17 | -- | -- | 0.0942 | 4.57 | 22.61 | 45 | -- | -- |
| 114.48 | 0.501 | 7.21 | -0.563 | -- | -1.05 | -- | -0.637 | 0.158 | -- | 22.21 | 45 | -- | -- |
| 104.16 | 0.478 | 7.19 | -0.469 | 0.628 | -- | 0.499 | -- | 0.237 | 5.35 | -- | -- | -- | -- |
| 104.78 | 0.479 | 7.19 | -0.468 | 0.631 | -- | -- | -- | 0.235 | 5.4 | -- | -- | -- | -- |
| 114.94 | 0.502 | 7.22 | -0.618 | -- | -0.911 | -- | -- | 0.144 | -- | 22.6 | 34 | -- | -- |
| 100.62 | 0.47 | 7.2 | -- | 0.677 | -0.891 | -- | -- | 0.199 | 4.78 | 22.59 | 36 | -- | -- |
| 125.55 | 0.524 | 7.2 | -0.447 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 110.56 | 0.492 | 7.18 | -- | 0.624 | -- | -- | -- | 0.287 | 5.43 | -- | -- | -- | -- |
| 124.32 | 0.521 | 7.2 | -- | -- | -0.695 | -- | -- | 0.235 | -- | 22.51 | 31 | -- | -- |
| 130.82 | 0.534 | 7.18 | -- | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 2 | 86.54 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 3 | 86.71 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 4 | 86.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 5 | 86.79 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 7 | 86.88 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 8 | 86.89 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 9 | 86.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 10 | 86.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 11 | 86.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 19 | 87.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 23 | 87.10 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 24 | 87.11 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 25 | 87.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 28 | 87.20 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 40 | 87.34 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 42 | 87.34 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 106 | 88.11 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 17 | 20 |
| 120 | 88.17 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 19 | 18 |
| 122 | 88.17 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 155 | 88.24 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 156 | 88.25 | temperature | 20.0 | 30 | < th | dose dependent | no | NA | NA |
| 160 | 88.25 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 161 | 88.25 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 162 | 88.26 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 187 | 88.29 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 227 | 88.36 | temperature | 25.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 277 | 88.45 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 304 | 88.52 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 328 | 88.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 330 | 88.58 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 331 | 88.58 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 13 |
| 348 | 88.60 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 379 | 88.64 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 433 | 88.77 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 453 | 88.82 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 2 | 2 |
| 454 | 88.82 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 467 | 88.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 475 | 88.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 480 | 88.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 495 | 88.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 504 | 88.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 507 | 88.91 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 555 | 89.05 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 600 | 89.14 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 13 |
| 614 | 89.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 15 |
| 643 | 89.26 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 647 | 89.27 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 652 | 89.28 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 835 | 89.62 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 837 | 89.62 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 844 | 89.64 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 872 | 89.69 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 894 | 89.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 906 | 89.75 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 909 | 89.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 932 | 89.79 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 935 | 89.79 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 943 | 89.80 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 963 | 89.85 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 17 |