Os06g0145200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0145200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.1	(0.0412)	R²	:	0.00642
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.149	(0.0868)	R²_dN8	:	0.00829	R²_N8	:	0.00642
σ	:	0.777
deviance	:	276.99
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
260.15	0.758	3.13	0.0847	2.58e-08	0.898	-1.07	2.74	0.211	19	1	4398	--	--
264.79	0.758	3.06	0.496	0.0351	0.49	-0.967	--	0.297	18.4	4.503	5965	--	--
263.12	0.755	3.13	0.124	0.00246	0.879	--	2.62	0.211	6.78	1	4391	--	--
267.33	0.762	3.07	0.503	0.247	0.558	--	--	0.29	18.8	4.611	6517	--	--
263.12	0.755	3.13	0.124	--	0.881	--	2.63	0.211	--	1	4392	--	--
268.93	0.769	3.09	0.438	0.00852	--	-1.05	--	0.203	18.3	--	--	--	--
271.4	0.771	3.09	0.447	0.064	--	--	--	0.198	0.0961	--	--	--	--
266.47	0.76	3.06	0.46	--	0.488	--	--	0.345	--	6.532	10308	--	--
270.3	0.766	3.08	--	0.13	0.573	--	--	0.29	19.9	10	9434	--	--
271.66	0.77	3.09	0.449	--	--	--	--	0.199	--	--	--	--	--
276.68	0.778	3.1	--	0.0703	--	--	--	0.148	0.451	--	--	--	--
270.21	0.766	3.07	--	--	0.541	--	--	0.279	--	10	10336	--	--
276.99	0.777	3.1	--	--	--	--	--	0.149	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	253.71	atmosphere	1010.0	30	< th	dose dependent	rect.	6	1
2	254.67	wind	1.0	720	> th	dose independent	rect.	9	8
3	255.24	temperature	25.0	30	> th	dose dependent	rect.	5	2
4	255.38	atmosphere	1010.0	10	< th	dose independent	rect.	6	1
10	255.86	temperature	25.0	10	> th	dose dependent	rect.	2	5
11	255.90	wind	3.0	30	> th	dose independent	rect.	6	1
16	256.15	temperature	25.0	90	> th	dose independent	rect.	5	2
17	256.24	radiation	10.0	30	< th	dose independent	rect.	6	1
20	256.46	temperature	25.0	1440	> th	dose dependent	rect.	4	3
22	256.54	radiation	1.0	1440	> th	dose independent	rect.	7	9
23	256.54	radiation	1.0	1440	< th	dose independent	rect.	7	9
24	256.56	temperature	30.0	720	< th	dose independent	rect.	17	16
27	256.71	radiation	1.0	1440	< th	dose dependent	rect.	7	9
40	257.74	wind	1.0	10	> th	dose dependent	rect.	6	1
42	257.79	temperature	25.0	10	> th	dose dependent	rect.	20	11
45	257.82	temperature	25.0	1440	> th	dose independent	rect.	5	1
51	257.99	temperature	25.0	1440	> th	dose independent	rect.	4	3
53	258.12	radiation	1.0	1440	< th	dose dependent	rect.	20	20
59	258.18	radiation	1.0	1440	< th	dose dependent	rect.	24	16
68	258.25	temperature	25.0	1440	< th	dose independent	rect.	4	3
69	258.30	wind	9.0	90	> th	dose independent	rect.	17	2
70	258.30	wind	9.0	90	> th	dose dependent	rect.	17	2
83	258.42	wind	9.0	10	> th	dose independent	rect.	17	1
101	258.50	atmosphere	995.0	720	> th	dose independent	rect.	5	16
110	258.62	atmosphere	995.0	720	> th	dose independent	rect.	17	16
114	258.66	radiation	10.0	720	< th	dose independent	rect.	21	8
116	258.68	radiation	10.0	720	< th	dose dependent	rect.	21	8
121	258.71	radiation	1.0	4320	< th	dose dependent	rect.	7	16
122	258.71	radiation	1.0	4320	< th	dose dependent	rect.	7	18
133	258.74	precipitation	0.1	4320	> th	dose independent	rect.	6	8
137	258.75	radiation	1.0	4320	< th	dose dependent	rect.	7	12
139	258.76	precipitation	0.1	4320	< th	dose independent	rect.	6	8
140	258.76	precipitation	0.1	4320	< th	dose dependent	rect.	6	8
149	258.78	radiation	1.0	1440	< th	dose dependent	sin	3	NA
159	258.82	radiation	1.0	4320	< th	dose independent	rect.	7	15
161	258.82	radiation	1.0	4320	< th	dose independent	rect.	7	18
163	258.83	atmosphere	995.0	720	> th	dose independent	rect.	9	8
170	258.84	radiation	1.0	4320	< th	dose independent	rect.	7	12
204	258.89	temperature	10.0	720	> th	dose independent	rect.	21	8
205	258.89	temperature	30.0	720	< th	dose independent	rect.	21	8
206	258.89	humidity	50.0	720	> th	dose independent	rect.	21	8
209	258.89	atmosphere	995.0	720	> th	dose independent	rect.	21	8
213	258.89	temperature	10.0	720	> th	dose independent	rect.	5	16
216	258.91	radiation	1.0	14400	> th	dose independent	rect.	7	10
217	258.92	radiation	1.0	14400	< th	dose independent	rect.	7	10
231	258.99	temperature	25.0	10	> th	dose dependent	rect.	16	16
234	259.02	precipitation	0.1	4320	> th	dose independent	rect.	8	6
235	259.02	precipitation	0.1	4320	< th	dose independent	rect.	8	6
236	259.02	precipitation	0.1	4320	< th	dose dependent	rect.	8	6
258	259.08	radiation	1.0	1440	< th	dose independent	rect.	20	20
275	259.12	radiation	1.0	1440	< th	dose independent	rect.	24	16
291	259.21	temperature	10.0	720	> th	dose independent	rect.	9	8
292	259.21	atmosphere	1015.0	720	< th	dose independent	rect.	9	8
293	259.21	temperature	10.0	720	> th	dose independent	rect.	17	16
298	259.24	radiation	1.0	4320	> th	dose independent	rect.	7	12
324	259.26	radiation	1.0	1440	< th	dose dependent	rect.	18	14
374	259.41	temperature	25.0	90	> th	dose independent	rect.	1	6
447	259.62	precipitation	0.1	720	< th	dose independent	rect.	5	16
448	259.62	precipitation	0.1	720	< th	dose dependent	rect.	5	16
450	259.63	radiation	1.0	1440	< th	dose independent	sin	2	NA
457	259.65	temperature	20.0	14400	> th	dose independent	rect.	23	1
509	259.69	precipitation	0.1	720	< th	dose independent	rect.	21	8
510	259.69	radiation	1.0	4320	< th	dose dependent	sin	21	NA
511	259.69	precipitation	0.1	720	< th	dose dependent	rect.	21	8
529	259.73	humidity	90.0	30	< th	dose dependent	rect.	6	1
532	259.74	wind	9.0	720	< th	dose independent	rect.	21	8
545	259.77	radiation	1.0	10	> th	dose dependent	rect.	6	1
546	259.77	radiation	1.0	1440	< th	dose dependent	rect.	5	3
561	259.79	precipitation	0.1	4320	> th	dose dependent	rect.	6	8
562	259.79	radiation	1.0	1440	< th	dose dependent	rect.	20	12
565	259.79	temperature	10.0	30	> th	dose dependent	rect.	21	23
582	259.83	temperature	20.0	14400	< th	dose independent	rect.	23	1
599	259.84	radiation	1.0	1440	< th	dose dependent	rect.	24	8
612	259.86	radiation	1.0	1440	> th	dose independent	sin	3	NA
613	259.86	radiation	1.0	4320	< th	dose independent	sin	22	NA
654	259.88	radiation	1.0	4320	< th	dose dependent	rect.	12	11
656	259.88	radiation	1.0	4320	< th	dose dependent	rect.	12	13
676	259.90	wind	9.0	10	> th	dose dependent	sin	13	NA
690	259.91	radiation	1.0	4320	< th	dose dependent	rect.	16	7
692	259.91	radiation	1.0	4320	< th	dose dependent	rect.	16	9
705	259.92	radiation	1.0	14400	< th	dose dependent	rect.	16	1
751	259.94	precipitation	0.1	4320	< th	dose independent	rect.	4	20
763	259.94	precipitation	0.1	4320	< th	dose dependent	rect.	4	20
768	259.95	precipitation	0.1	4320	< th	dose independent	rect.	6	18
770	259.95	radiation	1.0	4320	< th	dose dependent	rect.	16	3
786	259.95	precipitation	0.1	4320	< th	dose dependent	rect.	6	18
790	259.96	precipitation	0.1	720	> th	dose independent	rect.	8	1
791	259.96	precipitation	0.1	4320	> th	dose independent	rect.	4	20
793	259.96	precipitation	0.1	720	> th	dose dependent	rect.	8	1
800	259.97	precipitation	0.1	4320	> th	dose independent	rect.	6	17
829	259.99	wind	3.0	30	> th	dose independent	rect.	20	2
856	260.01	precipitation	0.1	720	< th	dose independent	rect.	9	8
873	260.01	precipitation	0.1	720	< th	dose dependent	rect.	9	8
895	260.03	precipitation	0.1	4320	> th	dose dependent	rect.	8	6
967	260.08	temperature	20.0	14400	< th	dose independent	rect.	23	7