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Os06g0144800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP-binding protein lepA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0257) R2 : 0.573
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.64 (0.0667) R2dC : 0.569 R2C : 0.561
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.169 (0.054) R2dN8 : 0.0119 R2N8 : 0.00414
σ : 0.484
deviance : 107.06
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.46 0.439 10.5 -1.69 1.6 0.233 0.191 -6.44 -0.126 16.9 27.06 4672 -- --
97.4 0.46 10.4 -0.408 1.56 -0.304 -0.263 -- 0.0141 16.5 30.85 1195 -- --
87.55 0.436 10.5 -1.69 1.61 0.236 -- -6.47 -0.123 16.9 27.1 4660 -- --
92.64 0.448 10.3 -0.294 1.6 -0.49 -- -- 0.0182 16.9 29.69 2592 -- --
214.48 0.686 10.3 -0.868 -- 1.38 -- -3.2 -0.00392 -- 26.36 2751 -- --
103.15 0.476 10.3 -0.383 1.63 -- 0.169 -- 0.126 16.9 -- -- -- --
103.22 0.476 10.3 -0.382 1.63 -- -- -- 0.127 16.8 -- -- -- --
211.12 0.68 10.3 -0.599 -- 1.18 -- -- 0.0119 -- 25.19 44452 -- --
93.91 0.451 10.3 -- 1.59 -0.57 -- -- 0.0507 17 30.62 2615 -- --
244.01 0.73 10.3 -0.443 -- -- -- -- 0.0845 -- -- -- -- --
107.06 0.484 10.3 -- 1.64 -- -- -- 0.169 16.8 -- -- -- --
220.4 0.694 10.3 -- -- 1.09 -- -- 0.0824 -- 25.19 44452 -- --
249.18 0.737 10.3 -- -- -- -- -- 0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.92 wind 5.0 270 < th dose independent rect. 3 2
2 77.18 wind 5.0 90 < th dose independent rect. 3 5
4 78.34 precipitation 0.1 270 < th dose independent rect. 3 2
5 78.34 precipitation 0.1 270 < th dose dependent rect. 3 2
6 78.37 precipitation 0.1 90 < th dose independent rect. 3 5
7 78.37 precipitation 0.1 90 < th dose dependent rect. 3 5
9 78.62 wind 5.0 10 < th dose independent rect. 4 5
10 78.69 atmosphere 995.0 90 > th dose independent rect. 8 19
12 78.86 temperature 10.0 90 > th dose dependent rect. 3 5
14 78.96 atmosphere 995.0 10 > th dose independent rect. 9 19
16 78.97 temperature 10.0 90 > th dose independent rect. 3 5
18 78.97 temperature 30.0 90 < th dose independent rect. 3 5
19 78.97 humidity 50.0 90 > th dose independent rect. 3 5
21 78.97 atmosphere 995.0 90 > th dose independent rect. 3 5
22 78.97 atmosphere 1015.0 90 < th dose independent rect. 3 5
23 78.97 temperature 10.0 90 > th dose independent rect. 8 19
24 79.07 radiation 1.0 270 < th dose dependent rect. 3 2
25 79.09 radiation 40.0 90 < th dose independent rect. 3 5
28 79.15 wind 9.0 90 < th dose independent rect. 8 19
31 79.26 temperature 10.0 270 > th dose independent rect. 3 2
33 79.26 temperature 30.0 270 < th dose independent rect. 3 2
34 79.26 humidity 50.0 270 > th dose independent rect. 3 2
37 79.26 atmosphere 995.0 270 > th dose independent rect. 3 2
38 79.26 atmosphere 1010.0 270 < th dose independent rect. 3 2
40 79.26 radiation 20.0 270 < th dose independent rect. 3 2
43 79.26 precipitation 0.1 10 < th dose independent rect. 4 5
44 79.26 temperature 10.0 270 > th dose independent rect. 5 22
45 79.26 precipitation 0.1 10 < th dose dependent rect. 4 5
46 79.28 radiation 30.0 270 < th dose dependent rect. 3 2
52 79.36 radiation 1.0 270 < th dose independent rect. 3 2
54 79.36 wind 9.0 90 < th dose dependent rect. 3 5
58 79.44 temperature 10.0 10 > th dose independent rect. 4 5
60 79.44 temperature 30.0 10 < th dose independent rect. 4 5
61 79.44 humidity 50.0 10 > th dose independent rect. 4 5
63 79.44 atmosphere 995.0 10 > th dose independent rect. 4 5
64 79.44 atmosphere 1015.0 10 < th dose independent rect. 4 5
65 79.44 temperature 10.0 10 > th dose independent rect. 9 19
66 79.44 wind 9.0 270 < th dose dependent rect. 3 2
67 79.62 wind 9.0 10 < th dose independent rect. 9 19
68 79.64 temperature 10.0 10 > th dose dependent rect. 3 6
85 79.85 atmosphere 1015.0 270 < th dose dependent rect. 3 2
88 79.92 wind 9.0 270 < th dose independent rect. 5 22
94 79.99 wind 9.0 10 < th dose dependent rect. 4 5
98 80.07 radiation 40.0 10 < th dose independent rect. 4 5
100 80.12 temperature 10.0 270 > th dose dependent rect. 9 1
107 80.32 temperature 10.0 270 > th dose dependent rect. 3 2
108 80.33 precipitation 0.1 90 < th dose independent rect. 8 19
109 80.33 precipitation 0.1 90 < th dose dependent rect. 8 19
111 80.34 precipitation 0.1 10 < th dose independent rect. 15 18
113 80.34 precipitation 0.1 10 < th dose dependent rect. 15 18
114 80.38 radiation 1.0 270 > th dose independent rect. 9 1
132 80.43 wind 1.0 270 > th dose independent rect. 3 2
137 80.48 temperature 15.0 270 > th dose independent rect. 9 1
138 80.50 wind 5.0 270 < th dose independent rect. 1 6
145 80.59 temperature 15.0 10 > th dose independent rect. 15 18
146 80.59 humidity 50.0 30 > th dose independent rect. 9 19
151 80.63 atmosphere 1015.0 90 < th dose dependent rect. 3 5
183 80.89 temperature 20.0 10 > th dose independent rect. 9 6
184 80.90 wind 9.0 10 < th dose independent rect. 15 18
189 81.00 temperature 10.0 10 > th dose independent rect. 9 6
191 81.00 atmosphere 995.0 10 > th dose independent rect. 9 6
192 81.00 atmosphere 1015.0 10 < th dose independent rect. 9 6
193 81.00 precipitation 0.1 10 < th dose independent rect. 9 6
195 81.00 precipitation 0.1 10 < th dose dependent rect. 9 6
198 81.04 precipitation 0.1 10 < th dose independent rect. 9 19
199 81.04 precipitation 0.1 10 < th dose dependent rect. 9 19
204 81.09 radiation 1.0 10 > th dose independent rect. 9 6
206 81.11 wind 9.0 10 < th dose independent rect. 9 6
207 81.12 humidity 50.0 270 > th dose dependent rect. 3 2
209 81.13 precipitation 0.1 270 < th dose independent rect. 9 1
211 81.13 precipitation 0.1 270 < th dose dependent rect. 9 1
212 81.14 wind 9.0 270 < th dose independent rect. 9 1
214 81.14 atmosphere 1015.0 10 < th dose dependent rect. 4 5
233 81.28 atmosphere 995.0 270 > th dose independent rect. 9 1
234 81.28 atmosphere 1015.0 270 < th dose independent rect. 9 1
235 81.28 temperature 10.0 270 > th dose independent rect. 10 23
237 81.29 humidity 90.0 270 < th dose independent rect. 9 1
238 81.30 humidity 50.0 270 > th dose independent rect. 9 1
252 81.34 wind 1.0 10 > th dose independent rect. 9 6
278 81.44 temperature 10.0 1440 > th dose independent rect. 10 6
282 81.44 temperature 10.0 1440 > th dose independent rect. 16 18
286 81.45 precipitation 0.1 270 < th dose independent rect. 10 23
288 81.45 precipitation 0.1 270 < th dose dependent rect. 10 23
326 81.77 radiation 40.0 90 < th dose independent rect. 13 19
334 81.82 temperature 10.0 10 > th dose dependent rect. 9 6
359 81.90 radiation 40.0 10 < th dose independent rect. 15 18
363 81.96 wind 1.0 270 > th dose independent rect. 9 1
378 82.01 humidity 90.0 10 < th dose independent rect. 9 6
383 82.04 radiation 1.0 270 < th dose dependent rect. 3 8
387 82.05 atmosphere 1000.0 270 > th dose independent rect. 20 15
397 82.12 temperature 10.0 90 > th dose dependent rect. 8 5
416 82.20 wind 9.0 270 < th dose dependent rect. 8 2
422 82.25 atmosphere 1015.0 90 < th dose independent rect. 8 19
427 82.27 atmosphere 995.0 10 > th dose dependent rect. 9 19
431 82.31 temperature 10.0 1440 > th dose independent rect. 4 6
434 82.31 atmosphere 995.0 1440 > th dose independent rect. 4 6
435 82.31 atmosphere 1015.0 1440 < th dose independent rect. 4 6
436 82.31 temperature 10.0 1440 > th dose independent rect. 10 18
452 82.38 precipitation 0.1 270 < th dose independent rect. 5 22
453 82.38 precipitation 0.1 270 < th dose dependent rect. 5 22
476 82.47 wind 9.0 270 < th dose independent rect. 10 23
488 82.50 radiation 40.0 270 < th dose dependent rect. 15 11
525 82.63 atmosphere 1015.0 10 < th dose independent rect. 9 19
533 82.66 atmosphere 995.0 270 > th dose independent rect. 5 22
546 82.70 atmosphere 1015.0 10 < th dose independent rect. 15 18
548 82.71 radiation 10.0 270 < th dose independent rect. 15 11
556 82.75 humidity 50.0 30 > th dose independent rect. 9 6
559 82.77 precipitation 0.1 270 < th dose independent rect. 2 15
560 82.77 precipitation 0.1 270 < th dose dependent rect. 2 15
563 82.80 precipitation 0.1 270 < th dose independent rect. 11 20
564 82.80 precipitation 0.1 270 < th dose dependent rect. 11 20
584 82.85 radiation 1.0 270 > th dose independent rect. 7 4
591 82.87 atmosphere 995.0 270 > th dose independent rect. 6 20
628 83.00 wind 9.0 270 < th dose dependent rect. 7 4
630 83.02 temperature 10.0 270 > th dose independent rect. 1 6
632 83.02 temperature 30.0 270 < th dose independent rect. 1 6
633 83.02 humidity 50.0 270 > th dose independent rect. 1 6
635 83.02 atmosphere 995.0 270 > th dose independent rect. 1 6
636 83.02 atmosphere 1015.0 270 < th dose independent rect. 1 6
637 83.02 radiation 30.0 270 < th dose independent rect. 1 6
718 83.22 temperature 10.0 10 > th dose dependent rect. 15 18
724 83.24 temperature 15.0 270 > th dose independent rect. 6 7
744 83.31 precipitation 0.1 270 < th dose independent rect. 6 20
746 83.31 precipitation 0.1 270 < th dose dependent rect. 6 20
754 83.36 atmosphere 995.0 10 > th dose independent rect. 15 18
794 83.43 atmosphere 995.0 10 > th dose dependent rect. 4 5
818 83.52 wind 1.0 90 > th dose independent rect. 3 5
819 83.52 temperature 10.0 270 > th dose independent rect. 17 9
823 83.52 temperature 10.0 270 > th dose independent rect. 2 15
824 83.52 atmosphere 1015.0 270 < th dose independent rect. 2 15
825 83.52 wind 9.0 270 < th dose independent rect. 11 20
831 83.53 radiation 1.0 270 < th dose independent rect. 3 8
832 83.53 wind 9.0 270 < th dose independent rect. 17 9
834 83.53 wind 9.0 10 < th dose dependent rect. 15 18
835 83.54 wind 9.0 270 < th dose independent rect. 2 15
836 83.54 humidity 50.0 270 > th dose independent rect. 6 20
843 83.56 humidity 50.0 270 > th dose independent rect. 17 9
865 83.62 temperature 10.0 270 > th dose independent rect. 11 20
867 83.63 humidity 50.0 270 > th dose independent rect. 7 4
917 83.75 humidity 50.0 90 > th dose dependent rect. 3 5
918 83.75 atmosphere 1000.0 90 > th dose dependent rect. 3 5
947 83.86 atmosphere 995.0 270 > th dose independent rect. 17 9
964 83.89 temperature 10.0 270 > th dose dependent rect. 6 6
966 83.91 precipitation 0.1 270 < th dose independent rect. 6 7
969 83.91 precipitation 0.1 270 < th dose dependent rect. 6 7
976 83.93 wind 9.0 90 < th dose dependent rect. 8 19
997 84.00 atmosphere 995.0 270 > th dose independent rect. 6 7
998 84.00 atmosphere 1015.0 270 < th dose independent rect. 6 7