Os06g0144200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectate lyase homolog (EC 4.2.2.2).
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Os06g0144200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectate lyase homolog (EC 4.2.2.2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.26 | 0.305 | 2.92 | 0.00157 | 0.0675 | 0.319 | -0.295 | -0.921 | 0.0749 | 4.66 | 0.3002 | 1625 | -- | -- |
| 42.68 | 0.304 | 2.91 | 0.0227 | 0.0663 | 0.292 | -0.348 | -- | 0.0755 | 4.68 | 0.4203 | 1744 | -- | -- |
| 42.47 | 0.304 | 2.92 | 0.00897 | 0.0694 | 0.314 | -- | -1.05 | 0.0768 | 5.25 | 0.3016 | 1587 | -- | -- |
| 42.94 | 0.305 | 2.9 | 0.0225 | 0.0704 | 0.259 | -- | -- | 0.0762 | 4.82 | 0.4001 | 2450 | -- | -- |
| 42.71 | 0.304 | 2.92 | 0.00422 | -- | 0.323 | -- | -0.989 | 0.0786 | -- | 0.2996 | 1592 | -- | -- |
| 43.38 | 0.309 | 2.91 | 0.0658 | 0.0843 | -- | -0.304 | -- | 0.0465 | 5.13 | -- | -- | -- | -- |
| 43.6 | 0.309 | 2.91 | 0.0663 | 0.0844 | -- | -- | -- | 0.048 | 5.82 | -- | -- | -- | -- |
| 43.2 | 0.306 | 2.9 | 0.0216 | -- | 0.281 | -- | -- | 0.084 | -- | 0.4096 | 2498 | -- | -- |
| 42.95 | 0.305 | 2.9 | -- | 0.0698 | 0.274 | -- | -- | 0.0768 | 5.18 | 0.4465 | 2464 | -- | -- |
| 43.97 | 0.31 | 2.91 | 0.0689 | -- | -- | -- | -- | 0.05 | -- | -- | -- | -- | -- |
| 43.71 | 0.309 | 2.91 | -- | 0.0855 | -- | -- | -- | 0.0407 | 5.79 | -- | -- | -- | -- |
| 43.21 | 0.306 | 2.9 | -- | -- | 0.291 | -- | -- | 0.0825 | -- | 0.4 | 2498 | -- | -- |
| 44.09 | 0.31 | 2.91 | -- | -- | -- | -- | -- | 0.0424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.46 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 2 | 40.46 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 3 | 40.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 13 | 40.79 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 16 | 40.81 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 40 | 41.10 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 41 | 41.11 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 51 | 41.20 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 94 | 41.52 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 96 | 41.53 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 143 | 41.68 | humidity | 90.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 188 | 41.85 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 202 | 41.88 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 203 | 41.88 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 208 | 41.90 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 227 | 41.94 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 247 | 41.97 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 257 | 41.98 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 259 | 41.98 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 260 | 41.98 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 264 | 41.99 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 265 | 41.99 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 289 | 42.02 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 306 | 42.03 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 310 | 42.04 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 313 | 42.04 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 1 | 4 |
| 318 | 42.04 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 330 | 42.06 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 331 | 42.06 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 332 | 42.06 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 345 | 42.07 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 354 | 42.08 | temperature | 25.0 | 720 | > th | dose independent | sin | 11 | NA |
| 376 | 42.10 | temperature | 25.0 | 720 | < th | dose independent | sin | 11 | NA |
| 388 | 42.11 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 391 | 42.11 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 435 | 42.14 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 7 |
| 450 | 42.16 | wind | 1.0 | 1440 | < th | dose independent | rect. | 24 | 2 |
| 452 | 42.16 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 2 |
| 457 | 42.16 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 466 | 42.17 | humidity | 80.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 476 | 42.18 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 480 | 42.18 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 481 | 42.18 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 493 | 42.18 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 501 | 42.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 503 | 42.19 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 504 | 42.19 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 507 | 42.19 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 509 | 42.19 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 511 | 42.19 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 516 | 42.19 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 529 | 42.19 | temperature | 25.0 | 90 | > th | dose independent | rect. | 21 | 10 |
| 530 | 42.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 531 | 42.19 | wind | 7.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 533 | 42.19 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 536 | 42.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 541 | 42.19 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 557 | 42.20 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 565 | 42.21 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 566 | 42.21 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 569 | 42.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 576 | 42.21 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 585 | 42.21 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 586 | 42.21 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 587 | 42.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 606 | 42.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 625 | 42.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 744 | 42.28 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 9 |
| 784 | 42.30 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 788 | 42.30 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 807 | 42.32 | wind | 3.0 | 720 | < th | dose independent | rect. | 2 | 3 |
| 819 | 42.32 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 865 | 42.35 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 866 | 42.35 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 906 | 42.37 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 910 | 42.38 | humidity | 90.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 920 | 42.39 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 922 | 42.39 | humidity | 80.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 937 | 42.39 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 985 | 42.42 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 996 | 42.43 | wind | 1.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 999 | 42.43 | wind | 1.0 | 1440 | > th | dose independent | rect. | 24 | 2 |