Os06g0144000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCT domain containing protein.
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Os06g0144000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.69 | 0.281 | 9.47 | 0.31 | 0.731 | -0.705 | -0.767 | 0.596 | 0.244 | 18.3 | 1010 | 4090 | -- | -- |
| 36.64 | 0.282 | 9.46 | 0.436 | 0.725 | -0.692 | -0.671 | -- | 0.26 | 18.3 | 1010 | 4219 | -- | -- |
| 37.11 | 0.284 | 9.47 | 0.326 | 0.728 | -0.716 | -- | 0.555 | 0.25 | 18.2 | 1010 | 4007 | -- | -- |
| 37.82 | 0.286 | 9.46 | 0.447 | 0.733 | -0.69 | -- | -- | 0.27 | 18.3 | 1010 | 4199 | -- | -- |
| 60.97 | 0.364 | 9.47 | 0.0206 | -- | -0.603 | -- | 0.9 | 0.184 | -- | 1009 | 22489 | -- | -- |
| 50.78 | 0.334 | 9.43 | 0.625 | 0.699 | -- | -0.651 | -- | 0.407 | 18.4 | -- | -- | -- | -- |
| 51.82 | 0.337 | 9.43 | 0.633 | 0.696 | -- | -- | -- | 0.404 | 18.3 | -- | -- | -- | -- |
| 63.64 | 0.372 | 9.44 | 0.358 | -- | -0.604 | -- | -- | 0.272 | -- | 1009 | 22361 | -- | -- |
| 37.82 | 0.286 | 9.45 | -- | 0.629 | -0.867 | -- | -- | 0.204 | 18.2 | 1013 | 37505 | -- | -- |
| 76.96 | 0.41 | 9.41 | 0.615 | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
| 62.39 | 0.369 | 9.44 | -- | 0.687 | -- | -- | -- | 0.334 | 18.4 | -- | -- | -- | -- |
| 62.62 | 0.369 | 9.46 | -- | -- | -0.937 | -- | -- | 0.165 | -- | 1013 | 37870 | -- | -- |
| 86.93 | 0.435 | 9.43 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.47 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 32.63 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 6 | 32.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 48 | 33.09 | humidity | 60 | 43200 | < th | dose dependent | sin | 3 | NA |
| 66 | 33.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 81 | 33.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 91 | 33.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 97 | 33.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 103 | 33.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 104 | 33.25 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 164 | 33.28 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 183 | 33.29 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 201 | 33.31 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 249 | 33.40 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 251 | 33.40 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 259 | 33.42 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 276 | 33.45 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 278 | 33.46 | humidity | 50 | 43200 | > th | dose independent | sin | 15 | NA |
| 308 | 33.49 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 344 | 33.53 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 346 | 33.54 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 365 | 33.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 377 | 33.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 378 | 33.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 415 | 33.63 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 433 | 33.64 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 498 | 33.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 504 | 33.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 533 | 33.71 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 558 | 33.71 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 603 | 33.73 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 629 | 33.75 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 665 | 33.78 | humidity | 50 | 43200 | < th | dose independent | sin | 15 | NA |
| 676 | 33.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 689 | 33.80 | humidity | 50 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 696 | 33.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 699 | 33.81 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 724 | 33.84 | humidity | 60 | 43200 | > th | dose independent | sin | 4 | NA |
| 740 | 33.85 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 880 | 33.94 | humidity | 60 | 43200 | < th | dose independent | sin | 5 | NA |
| 929 | 33.94 | radiation | 20 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 931 | 33.95 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 942 | 33.95 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 948 | 33.96 | humidity | 70 | 43200 | < th | dose independent | sin | 3 | NA |
| 949 | 33.96 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 964 | 33.96 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 18 |