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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0143800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0201) R2 : 4.63e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00614 (0.0423) R2dN8 : 5.97e-05 R2N8 : 4.63e-05
σ : 0.378
deviance : 65.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.56 0.369 3.21 0.207 0.335 0.244 -1.76 -1.67 0.0517 11.1 0.5355 90 -- --
63.8 0.372 3.21 0.132 0.25 0.192 0.0702 -- 0.0463 11.4 0.008382 126 -- --
63.35 0.371 3.21 0.174 0.335 0.252 -- -0.296 0.0564 10.7 0.06041 111 -- --
63.75 0.372 3.22 0.136 0.251 0.191 -- -- 0.0407 10.8 0.009979 126 -- --
64.92 0.375 3.23 0.0936 -- 0.036 -- -0.283 0.0149 -- 0.2397 234 -- --
64.22 0.376 3.22 0.0913 0.141 -- -0.231 -- 0.0127 6.61 -- -- -- --
64.34 0.376 3.22 0.0885 0.141 -- -- -- 0.0137 7.11 -- -- -- --
63.85 0.372 3.22 0.119 -- 0.252 -- -- 0.0256 -- 0.2347 932 -- --
64.04 0.373 3.22 -- 0.259 0.196 -- -- 0.0342 10.8 0.04998 126 -- --
65.38 0.378 3.23 0.0912 -- -- -- -- 0.0163 -- -- -- -- --
64.54 0.376 3.22 -- 0.142 -- -- -- 0.00389 7.07 -- -- -- --
64.21 0.373 3.23 -- -- 0.24 -- -- 0.0123 -- 0.2699 918 -- --
65.6 0.378 3.23 -- -- -- -- -- 0.00614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.24 temperature 25.0 270 > th dose independent rect. 1 1
3 55.36 temperature 25.0 90 > th dose dependent rect. 2 2
6 55.46 temperature 25.0 90 > th dose dependent rect. 1 4
12 55.91 atmosphere 1005.0 30 > th dose dependent rect. 2 3
26 57.75 radiation 1.0 43200 < th dose dependent rect. 3 1
33 57.99 humidity 90.0 10 < th dose independent rect. 4 1
38 58.20 atmosphere 1000.0 30 > th dose independent rect. 3 23
59 58.62 wind 1.0 30 > th dose independent rect. 4 1
72 58.66 wind 9.0 1440 < th dose independent rect. 3 1
73 58.66 temperature 10.0 1440 > th dose independent rect. 3 1
76 58.66 temperature 30.0 1440 < th dose independent rect. 3 1
80 58.66 humidity 50.0 1440 > th dose independent rect. 3 1
89 58.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
90 58.66 radiation 1.0 1440 < th dose independent rect. 3 1
110 58.66 temperature 10.0 1440 > th dose independent rect. 4 23
126 58.74 atmosphere 1000.0 30 > th dose independent rect. 2 1
131 58.75 wind 3.0 30 < th dose independent rect. 2 1
134 58.76 wind 5.0 30 < th dose dependent rect. 2 1
138 58.77 temperature 10.0 30 > th dose independent rect. 2 1
140 58.77 temperature 30.0 30 < th dose independent rect. 2 1
141 58.77 humidity 50.0 30 > th dose independent rect. 2 1
145 58.77 atmosphere 1010.0 30 < th dose independent rect. 2 1
147 58.77 radiation 1.0 30 < th dose independent rect. 2 1
152 58.77 precipitation 0.1 30 < th dose independent rect. 2 1
153 58.77 atmosphere 1005.0 30 > th dose independent rect. 2 3
154 58.77 temperature 10.0 30 > th dose independent rect. 3 23
155 58.77 humidity 50.0 30 > th dose dependent rect. 2 1
158 58.77 radiation 1.0 30 < th dose dependent rect. 2 1
163 58.77 precipitation 0.1 30 < th dose dependent rect. 2 1
165 58.78 humidity 90.0 30 > th dose independent rect. 2 1
173 58.84 atmosphere 1015.0 30 < th dose dependent rect. 2 1
174 58.85 wind 1.0 30 > th dose independent rect. 2 1
179 58.89 temperature 25.0 10 > th dose independent rect. 4 1
180 58.89 wind 1.0 30 > th dose dependent rect. 4 1
181 58.89 temperature 30.0 30 < th dose dependent rect. 2 1
185 58.92 temperature 25.0 30 > th dose dependent rect. 4 1
193 58.96 atmosphere 1005.0 10 > th dose dependent rect. 4 1
200 59.02 precipitation 0.1 30 < th dose independent rect. 3 23
202 59.02 precipitation 0.1 30 < th dose dependent rect. 3 23
252 59.30 wind 5.0 30 < th dose dependent rect. 2 3
261 59.41 wind 3.0 30 < th dose independent rect. 2 3
262 59.41 wind 9.0 30 < th dose independent rect. 3 23
298 59.87 atmosphere 1000.0 30 > th dose independent rect. 5 21
303 59.92 radiation 1.0 30 < th dose dependent rect. 2 14
312 60.00 radiation 1.0 30 < th dose dependent rect. 2 12
314 60.01 radiation 1.0 10 < th dose independent rect. 2 12
317 60.04 humidity 50.0 30 > th dose independent rect. 3 23
321 60.07 wind 9.0 1440 < th dose independent rect. 3 3
322 60.07 temperature 10.0 1440 > th dose independent rect. 3 3
325 60.07 temperature 30.0 1440 < th dose independent rect. 3 3
329 60.07 humidity 50.0 1440 > th dose independent rect. 3 3
338 60.07 atmosphere 995.0 1440 > th dose independent rect. 3 3
339 60.07 radiation 20.0 1440 < th dose independent rect. 3 3
348 60.07 temperature 10.0 1440 > th dose independent rect. 6 21
353 60.08 wind 5.0 10 < th dose independent rect. 4 1
357 60.09 precipitation 0.1 30 < th dose independent rect. 2 3
358 60.09 precipitation 0.1 30 < th dose dependent rect. 2 3
362 60.10 temperature 30.0 30 < th dose dependent rect. 4 1
374 60.14 humidity 80.0 30 > th dose independent rect. 2 3
377 60.15 temperature 10.0 30 > th dose independent rect. 2 3
379 60.15 temperature 30.0 30 < th dose independent rect. 2 3
380 60.15 humidity 50.0 30 > th dose independent rect. 2 3
383 60.15 atmosphere 995.0 30 > th dose independent rect. 2 3
384 60.15 atmosphere 1010.0 30 < th dose independent rect. 2 3
386 60.15 radiation 1.0 30 < th dose independent rect. 2 3
391 60.15 wind 9.0 30 < th dose independent rect. 5 21
392 60.15 temperature 10.0 30 > th dose independent rect. 5 21
393 60.15 precipitation 0.1 30 < th dose independent rect. 5 21
394 60.15 radiation 20.0 30 < th dose dependent rect. 2 3
397 60.15 precipitation 0.1 30 < th dose dependent rect. 5 21
400 60.16 temperature 10.0 10 > th dose independent rect. 4 1
402 60.16 temperature 30.0 10 < th dose independent rect. 4 1
403 60.16 humidity 50.0 10 > th dose independent rect. 4 1
407 60.16 humidity 90.0 270 < th dose independent rect. 1 1
408 60.16 atmosphere 995.0 10 > th dose independent rect. 4 1
409 60.16 atmosphere 1010.0 10 < th dose independent rect. 4 1
411 60.16 radiation 1.0 10 < th dose independent rect. 4 1
416 60.16 temperature 10.0 10 > th dose independent rect. 5 23
418 60.16 radiation 10.0 10 < th dose dependent rect. 4 1
432 60.17 atmosphere 1005.0 10 > th dose independent rect. 4 1
449 60.18 precipitation 0.1 30 < th dose independent rect. 4 1
452 60.18 precipitation 0.1 30 < th dose dependent rect. 4 1
480 60.20 temperature 10.0 30 > th dose dependent rect. 4 1
492 60.21 radiation 1.0 30 < th dose dependent rect. 2 10
495 60.23 radiation 1.0 10 < th dose independent rect. 2 10
498 60.23 wind 9.0 10 < th dose dependent rect. 4 1
500 60.23 radiation 1.0 30 < th dose dependent rect. 2 6
507 60.25 humidity 90.0 90 < th dose independent rect. 2 3
513 60.26 radiation 1.0 10 < th dose independent rect. 2 6
537 60.28 humidity 50.0 30 > th dose dependent rect. 4 1
538 60.28 humidity 90.0 10 < th dose dependent rect. 4 1
573 60.34 atmosphere 1015.0 30 < th dose dependent rect. 4 1
592 60.40 wind 7.0 1440 < th dose independent rect. 5 1
594 60.40 temperature 10.0 1440 > th dose independent rect. 5 1
597 60.40 temperature 30.0 1440 < th dose independent rect. 5 1
601 60.40 humidity 50.0 1440 > th dose independent rect. 5 1
610 60.40 atmosphere 995.0 1440 > th dose independent rect. 5 1
611 60.40 atmosphere 1015.0 1440 < th dose independent rect. 5 1
612 60.40 radiation 20.0 1440 < th dose independent rect. 5 1
621 60.40 temperature 10.0 1440 > th dose independent rect. 6 23
632 60.47 humidity 50.0 30 > th dose independent rect. 5 21
649 60.60 wind 9.0 30 < th dose independent rect. 5 23
656 60.64 humidity 50.0 30 > th dose dependent rect. 2 3
664 60.69 temperature 25.0 1440 < th dose independent rect. 1 1
668 60.70 humidity 80.0 14400 < th dose dependent rect. 4 5
669 60.71 temperature 30.0 10 < th dose independent rect. 5 21
673 60.73 atmosphere 995.0 720 > th dose independent rect. 23 16
683 60.78 precipitation 0.1 30 < th dose independent rect. 5 23
686 60.78 precipitation 0.1 30 < th dose dependent rect. 5 23
706 60.87 humidity 70.0 14400 > th dose independent rect. 8 1
731 60.99 wind 1.0 30 > th dose independent rect. 5 21
732 60.99 wind 1.0 14400 < th dose dependent rect. 6 1
734 61.00 humidity 70.0 14400 > th dose independent rect. 4 5
735 61.00 humidity 70.0 14400 > th dose independent rect. 24 9
741 61.01 humidity 70.0 14400 > th dose independent rect. 6 3
748 61.02 humidity 70.0 14400 < th dose independent rect. 8 1
760 61.04 temperature 10.0 720 > th dose independent rect. 15 8
761 61.04 temperature 10.0 720 > th dose independent rect. 23 16
769 61.09 radiation 10.0 30 < th dose independent rect. 5 21
776 61.10 temperature 10.0 30 > th dose dependent rect. 5 21
777 61.10 radiation 1.0 90 < th dose dependent rect. 1 23
784 61.13 temperature 10.0 720 > th dose independent rect. 3 8
785 61.13 atmosphere 995.0 720 > th dose independent rect. 3 8
787 61.13 temperature 10.0 720 > th dose independent rect. 11 16
792 61.15 radiation 1.0 30 < th dose dependent rect. 19 23
793 61.16 precipitation 0.1 720 < th dose independent rect. 15 8
796 61.16 precipitation 0.1 720 < th dose dependent rect. 15 8
806 61.19 radiation 1.0 30 > th dose independent sin 6 NA
808 61.19 atmosphere 1000.0 10 > th dose independent rect. 17 9
809 61.19 wind 1.0 10 > th dose independent rect. 5 23
818 61.21 humidity 70.0 14400 < th dose independent rect. 6 3
823 61.21 humidity 50.0 720 > th dose independent rect. 3 8
836 61.22 atmosphere 995.0 30 > th dose dependent rect. 5 21
842 61.24 radiation 40.0 30 < th dose independent rect. 14 12
847 61.25 wind 9.0 720 < th dose independent rect. 3 8
860 61.27 humidity 60.0 10 > th dose independent rect. 14 12
897 61.30 temperature 30.0 90 < th dose independent rect. 11 18
900 61.30 wind 9.0 720 < th dose dependent rect. 2 1
910 61.32 atmosphere 1000.0 10 > th dose independent rect. 14 12
918 61.34 radiation 10.0 30 < th dose independent rect. 16 10
920 61.34 radiation 10.0 10 < th dose dependent rect. 16 10
928 61.35 radiation 1.0 90 < th dose dependent rect. 6 23
934 61.36 radiation 40.0 10 < th dose dependent rect. 14 12
936 61.37 atmosphere 1015.0 30 < th dose independent rect. 5 21
962 61.41 wind 1.0 14400 < th dose independent rect. 6 1
964 61.41 atmosphere 1000.0 10 > th dose independent rect. 2 12
977 61.43 wind 1.0 90 > th dose independent rect. 2 3
983 61.44 wind 5.0 14400 < th dose independent rect. 11 1
999 61.45 atmosphere 1000.0 90 > th dose independent rect. 11 18
1000 61.45 radiation 40.0 90 < th dose independent rect. 11 18