Os06g0143700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sulfate transporter 2.
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Os06g0143700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sulfate transporter 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.58 | 0.608 | 12 | -2.21 | 0.509 | -2.67 | -2.51 | 6.74 | -0.835 | 5.36 | 3.102 | 741 | -- | -- |
| 171.76 | 0.61 | 11.9 | -2.07 | 1.02 | -3.44 | 2.51 | -- | -0.78 | 6.55 | 2.897 | 785 | -- | -- |
| 166.64 | 0.601 | 11.9 | -2.2 | 0.717 | -3.07 | -- | 4.05 | -0.814 | 7.06 | 3.279 | 793 | -- | -- |
| 186.67 | 0.636 | 11.9 | -2.02 | 0.711 | -3.02 | -- | -- | -0.78 | 7.05 | 3.289 | 796 | -- | -- |
| 169.46 | 0.606 | 12 | -2.09 | -- | -2.15 | -- | 3.83 | -0.776 | -- | 3.435 | 783 | -- | -- |
| 193.75 | 0.653 | 12 | -1.85 | 1.51 | -- | -2.2 | -- | -0.64 | 18 | -- | -- | -- | -- |
| 205.63 | 0.672 | 12 | -1.83 | 1.5 | -- | -- | -- | -0.648 | 18 | -- | -- | -- | -- |
| 189.1 | 0.64 | 11.9 | -1.94 | -- | -2.09 | -- | -- | -0.733 | -- | 4.03 | 779 | -- | -- |
| 285.04 | 0.786 | 11.9 | -- | 0.05 | -1.96 | -- | -- | -0.538 | 19.2 | 9.62 | 770 | -- | -- |
| 322.75 | 0.839 | 11.9 | -1.87 | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
| 293.82 | 0.802 | 11.9 | -- | 1.53 | -- | -- | -- | -0.445 | 17.9 | -- | -- | -- | -- |
| 285.04 | 0.786 | 11.9 | -- | -- | -2.01 | -- | -- | -0.538 | -- | 9.494 | 773 | -- | -- |
| 415.33 | 0.951 | 11.9 | -- | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.30 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 2 | 155.49 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 25 | 157.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 26 | 157.78 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 29 | 158.33 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 13 |
| 30 | 158.55 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 42 | 158.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 45 | 159.17 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 15 |
| 88 | 161.41 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 92 | 161.69 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 96 | 161.79 | radiation | 1 | 720 | < th | dose independent | sin | 18 | NA |
| 123 | 162.95 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 10 |
| 127 | 162.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 161 | 163.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 180 | 163.92 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 5 |
| 212 | 164.84 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 17 |
| 234 | 165.32 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 3 |
| 240 | 165.72 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 2 |
| 241 | 165.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 243 | 165.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 257 | 165.97 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 261 | 166.27 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 266 | 166.39 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 286 | 166.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 287 | 166.58 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 299 | 166.80 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 8 |
| 320 | 167.12 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 18 |
| 328 | 167.20 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 344 | 167.32 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 11 |
| 350 | 167.37 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 369 | 167.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 380 | 167.74 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 386 | 167.78 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 21 |
| 415 | 168.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 427 | 168.14 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 17 |
| 473 | 168.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 496 | 168.56 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 505 | 168.61 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 9 | NA |
| 530 | 168.74 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 11 |
| 551 | 168.89 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 16 |
| 574 | 168.98 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 635 | 169.29 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 652 | 169.37 | humidity | 90 | 270 | < th | dose independent | rect. | 8 | 16 |
| 709 | 169.62 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 723 | 169.66 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 727 | 169.67 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 746 | 169.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 751 | 169.73 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 21 |
| 772 | 169.78 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 782 | 169.80 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 792 | 169.82 | humidity | 70 | 720 | > th | dose dependent | sin | 20 | NA |
| 806 | 169.86 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 818 | 169.88 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 13 |
| 830 | 169.91 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 842 | 169.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 894 | 170.03 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 908 | 170.05 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 922 | 170.07 | atmosphere | 995 | 14400 | > th | dose independent | sin | 2 | NA |
| 947 | 170.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 959 | 170.12 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 962 | 170.13 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 973 | 170.15 | atmosphere | 995 | 14400 | < th | dose independent | sin | 2 | NA |
| 991 | 170.17 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |