Os06g0143600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0143600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.86 | 0.14 | 11.5 | 0.157 | 0.436 | -0.172 | 0.304 | 0.402 | -0.00017 | 3.26 | 80 | 732 | -- | -- |
| 9.22 | 0.141 | 11.5 | 0.184 | 0.427 | -0.176 | 0.304 | -- | 0.0025 | 3.31 | 80 | 771 | -- | -- |
| 9.14 | 0.141 | 11.5 | 0.151 | 0.443 | -0.164 | -- | 0.405 | -0.00186 | 3.24 | 80.03 | 709 | -- | -- |
| 9.47 | 0.143 | 11.6 | 0.185 | 0.429 | -0.155 | -- | -- | -0.00187 | 3.14 | 81 | 751 | -- | -- |
| 15.66 | 0.185 | 11.5 | 0.207 | -- | 0.204 | -- | 0.23 | 0.0165 | -- | 80.03 | 709 | -- | -- |
| 9.86 | 0.147 | 11.5 | 0.194 | 0.425 | -- | 0.221 | -- | 0.00985 | 2.41 | -- | -- | -- | -- |
| 10.04 | 0.148 | 11.5 | 0.188 | 0.425 | -- | -- | -- | 0.00862 | 2.36 | -- | -- | -- | -- |
| 15.87 | 0.186 | 11.5 | 0.197 | -- | 0.206 | -- | -- | 0.0254 | -- | 83 | 1069 | -- | -- |
| 10.37 | 0.15 | 11.6 | -- | 0.432 | -0.176 | -- | -- | -0.0152 | 3.27 | 81 | 754 | -- | -- |
| 20.75 | 0.213 | 11.5 | 0.206 | -- | -- | -- | -- | 0.0191 | -- | -- | -- | -- | -- |
| 10.98 | 0.155 | 11.6 | -- | 0.429 | -- | -- | -- | -0.0124 | 2.37 | -- | -- | -- | -- |
| 16.73 | 0.191 | 11.6 | -- | -- | 0.213 | -- | -- | -0.00115 | -- | 79.41 | 1101 | -- | -- |
| 21.88 | 0.218 | 11.6 | -- | -- | -- | -- | -- | -0.00385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.51 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 7 | 8.58 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 8 | 8.58 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 10 | 8.62 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 19 | 8.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 23 | 8.68 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 24 | 8.68 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 61 | 8.72 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 70 | 8.73 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 85 | 8.74 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 86 | 8.75 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 87 | 8.75 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 88 | 8.75 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 99 | 8.76 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 103 | 8.76 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 114 | 8.76 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 115 | 8.77 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 6 | 1 |
| 116 | 8.77 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 123 | 8.78 | temperature | 25.0 | 270 | < th | dose independent | sin | 3 | NA |
| 124 | 8.78 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 149 | 8.80 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 151 | 8.80 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 21 |
| 163 | 8.81 | humidity | 80.0 | 720 | < th | dose independent | rect. | 6 | 15 |
| 168 | 8.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 189 | 8.82 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 13 |
| 192 | 8.82 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 200 | 8.82 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 22 |
| 201 | 8.82 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 216 | 8.83 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 230 | 8.83 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 231 | 8.83 | temperature | 30.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 240 | 8.84 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 242 | 8.84 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 262 | 8.84 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 267 | 8.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 272 | 8.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 294 | 8.85 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 22 |
| 296 | 8.85 | humidity | 80.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 321 | 8.86 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 324 | 8.86 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 8 |
| 341 | 8.86 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 23 |
| 356 | 8.87 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 358 | 8.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 400 | 8.88 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 417 | 8.88 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 453 | 8.88 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 465 | 8.89 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 12 |
| 489 | 8.89 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 22 |
| 496 | 8.89 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 11 | 6 |
| 504 | 8.89 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 514 | 8.90 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 5 | 11 |
| 515 | 8.90 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 545 | 8.90 | temperature | 10.0 | 90 | > th | dose dependent | sin | 22 | NA |
| 569 | 8.91 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 570 | 8.91 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 638 | 8.92 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 682 | 8.92 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 685 | 8.92 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 9 | 9 |
| 706 | 8.93 | humidity | 80.0 | 720 | < th | dose independent | sin | 20 | NA |
| 713 | 8.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 738 | 8.93 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 742 | 8.93 | temperature | 10.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 744 | 8.93 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 759 | 8.94 | temperature | 25.0 | 270 | > th | dose independent | sin | 1 | NA |
| 840 | 8.95 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 20 |
| 903 | 8.96 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 914 | 8.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 932 | 8.96 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 936 | 8.97 | wind | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 944 | 8.97 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 11 |
| 964 | 8.97 | wind | 7.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 965 | 8.97 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 992 | 8.97 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 999 | 8.98 | radiation | 40.0 | 270 | < th | dose independent | sin | 3 | NA |