Os06g0143100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0143100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.8 | 0.335 | 13.6 | 1.72 | 0.736 | -1.74 | 0.486 | 9.13 | -0.384 | 3.38 | 30.08 | 3944 | -- | -- |
| 52.42 | 0.337 | 13.7 | 0.405 | 0.794 | -0.653 | 0.774 | -- | -0.0654 | 3.18 | 27.3 | 7996 | -- | -- |
| 51.5 | 0.334 | 13.6 | 1.72 | 0.736 | -1.74 | -- | 9.23 | -0.386 | 3.24 | 30.08 | 3959 | -- | -- |
| 52.25 | 0.337 | 13.7 | 0.406 | 0.706 | -0.662 | -- | -- | -0.0707 | 3.14 | 26.7 | 7870 | -- | -- |
| 76.64 | 0.41 | 13.8 | 0.0728 | -- | -0.663 | -- | -0.977 | -0.359 | -- | 30.08 | 3959 | -- | -- |
| 68.59 | 0.388 | 13.8 | 0.0661 | 0.694 | -- | 0.528 | -- | -0.34 | 3.73 | -- | -- | -- | -- |
| 69.37 | 0.39 | 13.8 | 0.058 | 0.695 | -- | -- | -- | -0.343 | 3.56 | -- | -- | -- | -- |
| 71.79 | 0.396 | 13.7 | 0.22 | -- | -0.508 | -- | -- | -0.177 | -- | 26.7 | 7870 | -- | -- |
| 54.37 | 0.343 | 13.7 | -- | 0.682 | -0.594 | -- | -- | -0.16 | 3.31 | 28.41 | 7853 | -- | -- |
| 96.3 | 0.459 | 13.8 | 0.0872 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 69.46 | 0.39 | 13.8 | -- | 0.696 | -- | -- | -- | -0.349 | 3.56 | -- | -- | -- | -- |
| 73.04 | 0.399 | 13.7 | -- | -- | -0.493 | -- | -- | -0.205 | -- | 26.7 | 7870 | -- | -- |
| 96.51 | 0.459 | 13.8 | -- | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 50.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 11 | 50.55 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 12 | 50.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 13 | 50.61 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 17 | 50.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 19 | 50.77 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 22 | 50.80 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 26 | 50.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 28 | 50.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 29 | 50.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 41 | 51.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 45 | 51.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 47 | 51.08 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 49 | 51.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 61 | 51.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 63 | 51.14 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 68 | 51.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 69 | 51.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 70 | 51.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 72 | 51.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 83 | 51.27 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 90 | 51.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 98 | 51.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 100 | 51.39 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 102 | 51.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 123 | 51.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 137 | 51.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 140 | 51.54 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 141 | 51.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 142 | 51.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 146 | 51.55 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 147 | 51.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 148 | 51.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 156 | 51.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 166 | 51.58 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 176 | 51.60 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 181 | 51.61 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 190 | 51.64 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 191 | 51.64 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 207 | 51.65 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 222 | 51.68 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 232 | 51.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 239 | 51.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 250 | 51.74 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 260 | 51.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 265 | 51.78 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 281 | 51.80 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 288 | 51.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 301 | 51.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 303 | 51.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 307 | 51.84 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 340 | 51.89 | temperature | 20 | 14400 | > th | dose independent | sin | 14 | NA |
| 385 | 51.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 388 | 51.98 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 413 | 52.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 421 | 52.02 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 425 | 52.02 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 427 | 52.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 433 | 52.04 | temperature | 30 | 4320 | > th | dose independent | sin | 3 | NA |
| 444 | 52.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 453 | 52.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 456 | 52.06 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 463 | 52.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 464 | 52.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 500 | 52.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 501 | 52.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 504 | 52.10 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 506 | 52.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 529 | 52.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 544 | 52.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 547 | 52.13 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 573 | 52.16 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 724 | 52.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 783 | 52.22 | temperature | 30 | 4320 | < th | dose independent | sin | 2 | NA |
| 795 | 52.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 18 |
| 833 | 52.25 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 850 | 52.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 935 | 52.28 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 969 | 52.29 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |