Os06g0142800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os06g0142800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.91 | 0.43 | 10.3 | 0.659 | 1.87 | 0.966 | 0.847 | -2.05 | -0.0108 | 16.6 | 25.09 | 87 | -- | -- |
| 85.24 | 0.433 | 10.2 | 0.914 | 1.93 | 0.825 | 0.587 | -- | 0.0537 | 16.7 | 25.09 | 87 | -- | -- |
| 85.49 | 0.431 | 10.2 | 0.746 | 1.87 | 0.944 | -- | -1.18 | 0.0132 | 16.6 | 25.1 | 79 | -- | -- |
| 86.01 | 0.432 | 10.2 | 0.894 | 1.88 | 0.852 | -- | -- | 0.0497 | 16.6 | 25.12 | 66 | -- | -- |
| 196.73 | 0.653 | 10.3 | 0.29 | -- | 2.76 | -- | -3 | -0.307 | -- | 24.23 | 155 | -- | -- |
| 95.45 | 0.458 | 10.2 | 1.03 | 2.21 | -- | 0.842 | -- | 0.115 | 16.4 | -- | -- | -- | -- |
| 97.37 | 0.462 | 10.2 | 1.04 | 2.22 | -- | -- | -- | 0.12 | 16.4 | -- | -- | -- | -- |
| 202.11 | 0.662 | 10.3 | 0.571 | -- | 2.43 | -- | -- | -0.167 | -- | 24.3 | 158 | -- | -- |
| 106.49 | 0.481 | 10.3 | -- | 1.77 | 1.05 | -- | -- | -0.0971 | 16.7 | 24.23 | 86 | -- | -- |
| 360.75 | 0.888 | 10.2 | 0.952 | -- | -- | -- | -- | 0.0612 | -- | -- | -- | -- | -- |
| 125.82 | 0.525 | 10.2 | -- | 2.2 | -- | -- | -- | 0.00406 | 16.4 | -- | -- | -- | -- |
| 210.52 | 0.676 | 10.3 | -- | -- | 2.51 | -- | -- | -0.244 | -- | 24.23 | 155 | -- | -- |
| 384.65 | 0.915 | 10.2 | -- | -- | -- | -- | -- | -0.0444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 9 | 77.67 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 10 | 77.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 20 | 78.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 21 | 78.46 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 25 | 78.52 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 30 | 78.68 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 37 | 78.90 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 9 |
| 39 | 78.91 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 41 | 79.01 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 47 | 79.10 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 49 | 79.16 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 50 | 79.16 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 53 | 79.23 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 54 | 79.25 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 68 | 79.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 82 | 79.56 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 86 | 79.57 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 100 | 79.71 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 102 | 79.71 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 129 | 79.89 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 137 | 79.94 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 154 | 80.05 | temperature | 25.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 185 | 80.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 188 | 80.20 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 260 | 80.50 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 288 | 80.59 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 309 | 80.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 324 | 80.69 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 379 | 80.89 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 392 | 80.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 456 | 81.13 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 461 | 81.14 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 484 | 81.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 510 | 81.31 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 560 | 81.47 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 565 | 81.49 | humidity | 80.0 | 270 | < th | dose independent | sin | 5 | NA |
| 569 | 81.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 580 | 81.53 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 606 | 81.62 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 650 | 81.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 659 | 81.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 671 | 81.80 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 689 | 81.82 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 699 | 81.85 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 706 | 81.86 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 714 | 81.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 718 | 81.90 | humidity | 80.0 | 270 | > th | dose independent | sin | 4 | NA |
| 725 | 81.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 729 | 81.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 731 | 81.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 748 | 81.96 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 771 | 82.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 780 | 82.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 811 | 82.08 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 820 | 82.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 825 | 82.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 857 | 82.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 893 | 82.21 | humidity | 60.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 899 | 82.23 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 956 | 82.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 967 | 82.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |