Os06g0142500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calycin-like family protein.
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Os06g0142500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calycin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 402.7 | 0.943 | 7.69 | 9.08 | 1.42 | -4.47 | 0.392 | -14 | 3.09 | 17.9 | 0.528 | 15903 | -- | -- |
| 514.92 | 1.06 | 8.28 | 7.22 | 1.52 | -4.89 | 0.421 | -- | 2.39 | 4.69 | 3.977 | 2107 | -- | -- |
| 399.45 | 0.931 | 7.63 | 8.87 | 1.44 | -4.62 | -- | -14.3 | 3.24 | 17.6 | 0.1936 | 15866 | -- | -- |
| 500.82 | 1.04 | 8.13 | 6.91 | 1.64 | -5.04 | -- | -- | 2.53 | 4.73 | 3.598 | 2104 | -- | -- |
| 434.55 | 0.971 | 7.75 | 8.49 | -- | -4.92 | -- | -13.7 | 2.91 | -- | 0.5323 | 16486 | -- | -- |
| 621.54 | 1.17 | 8.07 | 7.35 | 1.34 | -- | 0.19 | -- | 3.06 | 18 | -- | -- | -- | -- |
| 621.62 | 1.17 | 8.06 | 7.35 | 1.34 | -- | -- | -- | 3.06 | 18 | -- | -- | -- | -- |
| 523.53 | 1.07 | 8.11 | 7.15 | -- | -3.02 | -- | -- | 2.75 | -- | 4.639 | 2259 | -- | -- |
| 1669.83 | 1.9 | 8.33 | -- | 1.81 | -5.71 | -- | -- | 1.95 | 4.13 | 6.529e-05 | 2067 | -- | -- |
| 714.79 | 1.25 | 8.04 | 7.31 | -- | -- | -- | -- | 3.03 | -- | -- | -- | -- | -- |
| 2045.56 | 2.12 | 8.25 | -- | 1.24 | -- | -- | -- | 2.24 | 18.3 | -- | -- | -- | -- |
| 626.14 | 1.17 | 8.65 | -- | -- | -6.36 | -- | -- | 0.308 | -- | 0.92 | 46800 | -- | -- |
| 2124.78 | 2.15 | 8.23 | -- | -- | -- | -- | -- | 2.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 357.16 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 3 | 357.67 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 14 | 380.65 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 380.89 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 18 | 381.03 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 28 | 381.60 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 35 | 381.92 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 40 | 382.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 50 | 382.60 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 74 | 383.52 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 75 | 383.56 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 103 | 384.30 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 109 | 384.40 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 117 | 384.46 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 122 | 384.51 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 131 | 384.65 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 145 | 384.92 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 147 | 384.95 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 156 | 385.08 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 165 | 385.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 178 | 385.37 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 186 | 385.44 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 211 | 385.70 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 225 | 385.84 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 238 | 386.00 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 355 | 387.03 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 427 | 387.64 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 433 | 387.69 | temperature | 20.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 484 | 388.12 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 549 | 388.66 | temperature | 20.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 606 | 389.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 637 | 389.23 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 643 | 389.26 | temperature | 20.0 | 43200 | < th | dose dependent | no | NA | NA |
| 664 | 389.42 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 671 | 389.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 686 | 389.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 687 | 389.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 699 | 389.58 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 749 | 389.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 753 | 389.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 759 | 389.85 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 789 | 389.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 797 | 390.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 826 | 390.13 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 830 | 390.15 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 855 | 390.28 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 863 | 390.32 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 896 | 390.50 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 933 | 390.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 989 | 391.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |