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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0142200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Early nodulin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.044) R2 : 0.598
β1 : 1.13 (0.161) R2dD : 0.0442 R2D : 0.0104
β2 : 1.28 (0.111) R2dC : 0.135 R2C : 0.229
β3 : 3.32 (0.231) R2dE : 0.205 R2E : 0.317
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.31 (0.878) R2dD*E : 0.0611 R2D*E : 0.0328
γ1 : 0.736 (0.0943) R2dN8 : 0.0726 R2N8 : 0.0566
σ : 0.821
deviance : 311.02
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_____
C
peak time of C : 23.4
E
wheather : humidity
threshold : 57.46
memory length : 61
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 3.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.65 0.828 4.16 1.13 1.3 3.29 0.419 7.02 0.736 23.3 57.11 66 18 3.25
348.2 0.869 4.16 1.17 1.3 3.25 1.59 -- 0.73 22.9 60.15 55 18 3.4
311.02 0.821 4.16 1.13 1.28 3.32 -- 7.31 0.736 23.4 57.46 61 18 3.3
357.63 0.881 4.16 1.08 1.29 3.34 -- -- 0.703 23.3 60.29 52 18 3.41
367.28 0.893 4.11 1.22 -- 2.9 -- 5.11 0.962 -- 40.62 43 18.1 5.42
457.7 1 4.15 1.17 1.94 -- 1.98 -- 0.868 21.9 -- -- -- --
472.38 1.02 4.15 1.09 1.93 -- -- -- 0.862 22.1 -- -- -- --
399.66 0.931 4.12 1.13 -- 2.9 -- -- 0.794 -- 41.21 51 18 5.51
388.01 0.917 4.18 -- 1.29 3.28 -- -- 0.586 23.5 58.78 48 18.1 3.35
696.62 1.23 4.1 1.12 -- -- -- -- 0.864 -- -- -- -- --
503.71 1.05 4.18 -- 1.93 -- -- -- 0.74 22.1 -- -- -- --
432.31 0.968 4.15 -- -- 2.88 -- -- 0.639 -- 38.57 57 18 5.41
729.46 1.26 4.13 -- -- -- -- -- 0.741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.30 humidity 50.0 90 > th dose dependent rect. 18 3
3 319.25 humidity 70.0 90 > th dose independent rect. 18 3
4 322.00 temperature 30.0 90 < th dose independent rect. 18 3
14 335.75 radiation 1.0 90 < th dose dependent rect. 18 3
17 336.46 temperature 30.0 90 < th dose independent rect. 18 5
20 337.19 radiation 1.0 90 < th dose independent rect. 18 3
24 338.23 wind 9.0 270 < th dose dependent rect. 18 2
25 338.30 humidity 60.0 90 > th dose independent rect. 18 5
36 340.13 wind 7.0 270 < th dose independent rect. 18 2
39 340.66 radiation 1.0 90 < th dose independent rect. 18 5
48 341.21 radiation 1.0 1440 < th dose dependent rect. 19 5
53 341.58 humidity 50.0 30 > th dose dependent rect. 18 5
62 341.93 atmosphere 995.0 270 > th dose independent rect. 18 2
73 342.38 temperature 10.0 270 > th dose independent rect. 18 2
76 342.38 atmosphere 1015.0 270 < th dose independent rect. 18 2
80 342.38 temperature 10.0 270 > th dose independent rect. 20 22
82 342.54 radiation 1.0 90 < th dose dependent rect. 18 5
86 343.01 radiation 30.0 43200 < th dose dependent rect. 19 5
100 344.03 wind 9.0 270 < th dose independent rect. 20 22
113 344.56 humidity 50.0 14400 > th dose independent rect. 19 5
114 344.57 temperature 10.0 1440 > th dose independent rect. 19 5
117 344.57 temperature 30.0 1440 < th dose independent rect. 19 5
121 344.57 humidity 50.0 1440 > th dose independent rect. 19 5
123 344.57 atmosphere 995.0 1440 > th dose independent rect. 19 5
124 344.57 radiation 1.0 1440 < th dose independent rect. 19 5
144 344.57 temperature 10.0 1440 > th dose independent rect. 24 19
179 345.27 wind 7.0 90 < th dose independent rect. 18 5
198 346.41 wind 9.0 90 < th dose independent rect. 23 19
201 346.47 wind 1.0 90 > th dose independent rect. 19 2
202 346.48 atmosphere 995.0 90 > th dose independent rect. 18 5
205 346.53 temperature 10.0 90 > th dose independent rect. 18 5
211 346.53 temperature 10.0 90 > th dose independent rect. 23 19
255 348.15 precipitation 0.1 90 < th dose independent rect. 23 19
256 348.15 precipitation 0.1 90 < th dose dependent rect. 23 19
269 348.39 atmosphere 1010.0 90 < th dose independent rect. 18 5
283 349.53 precipitation 0.1 270 < th dose independent rect. 20 22
284 349.53 precipitation 0.1 270 < th dose dependent rect. 20 22
351 351.96 atmosphere 995.0 90 > th dose dependent rect. 18 3
362 352.35 temperature 30.0 90 < th dose dependent rect. 18 3
407 354.36 precipitation 0.1 270 < th dose independent rect. 18 2
408 354.36 precipitation 0.1 270 < th dose dependent rect. 18 2
409 354.43 wind 9.0 90 < th dose dependent rect. 18 5
445 355.85 radiation 1.0 90 < th dose dependent rect. 14 9
447 355.94 radiation 1.0 1440 < th dose dependent rect. 20 2
478 357.12 atmosphere 1015.0 90 < th dose independent rect. 23 19
486 357.43 radiation 1.0 90 < th dose dependent sin 20 NA
487 357.43 radiation 10.0 43200 < th dose dependent rect. 20 2
526 358.63 temperature 10.0 90 > th dose dependent rect. 19 2
615 359.56 radiation 40.0 90 < th dose dependent rect. 18 17
753 360.97 atmosphere 995.0 90 > th dose independent rect. 23 19
756 361.10 humidity 50.0 10 > th dose dependent rect. 18 18
789 361.87 wind 7.0 270 < th dose independent rect. 16 5
921 363.84 temperature 10.0 270 > th dose independent rect. 16 5
922 363.84 radiation 40.0 270 < th dose independent rect. 16 5
928 363.90 radiation 30.0 90 < th dose dependent rect. 18 15
984 364.38 precipitation 0.1 90 < th dose independent rect. 18 5
985 364.38 precipitation 0.1 90 < th dose dependent rect. 18 5
989 364.49 atmosphere 995.0 270 > th dose independent rect. 20 21