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Os06g0142000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribosome biogenesis regulatory protein homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0203) R2 : 0.293
β1 : -0.875 (0.0743) R2dD : 0.223 R2D : 0.246
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.205 (0.0433) R2dN8 : 0.0464 R2N8 : 0.07
σ : 0.381
deviance : 66.46
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C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.43 0.334 10.1 -0.912 0.401 0.5 -0.0996 1.18 0.183 9.45 65.01 6150 -- --
52.03 0.336 10.1 -0.984 0.402 0.515 -0.0772 -- 0.229 9.27 65 10447 -- --
50.46 0.331 10.1 -0.915 0.404 0.496 -- 1.19 0.183 9.37 65.48 6145 -- --
52.02 0.336 10.1 -0.987 0.403 0.497 -- -- 0.219 9.32 65.35 10460 -- --
58.86 0.357 10.1 -0.947 -- 0.611 -- 1.12 0.201 -- 65 6536 -- --
56.3 0.352 10.1 -0.872 0.417 -- -0.0362 -- 0.203 9.31 -- -- -- --
56.31 0.351 10.1 -0.873 0.418 -- -- -- 0.203 9.28 -- -- -- --
60.02 0.361 10.1 -0.941 -- 0.61 -- -- 0.198 -- 67 6588 -- --
74.09 0.401 10 -- 0.41 0.517 -- -- 0.346 8.82 68 5477 -- --
66.46 0.381 10.1 -0.875 -- -- -- -- 0.205 -- -- -- -- --
76.39 0.409 10.1 -- 0.418 -- -- -- 0.3 9.44 -- -- -- --
80.29 0.417 10.1 -- -- 0.578 -- -- 0.377 -- 70.34 3792 -- --
86.65 0.434 10.1 -- -- -- -- -- 0.302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.53 wind 1.0 1440 > th dose independent rect. 12 1
2 49.74 wind 1.0 1440 < th dose independent rect. 12 1
3 49.76 wind 1.0 1440 < th dose dependent rect. 12 2
6 49.83 wind 1.0 1440 < th dose dependent rect. 12 7
8 49.84 radiation 40.0 4320 > th dose independent rect. 15 17
11 49.91 wind 1.0 1440 < th dose independent rect. 12 7
13 49.93 wind 1.0 1440 < th dose independent rect. 10 9
14 49.94 precipitation 0.1 1440 > th dose independent rect. 22 2
16 49.94 precipitation 0.1 1440 > th dose dependent rect. 22 2
20 49.96 wind 1.0 1440 < th dose independent rect. 10 4
22 49.99 radiation 30.0 43200 > th dose independent rect. 11 1
30 50.03 radiation 30.0 43200 < th dose dependent rect. 11 1
31 50.05 humidity 50.0 14400 > th dose independent rect. 15 21
33 50.05 wind 1.0 1440 < th dose dependent rect. 10 9
35 50.06 wind 1.0 1440 > th dose independent rect. 12 7
44 50.08 wind 1.0 1440 < th dose dependent rect. 9 6
66 50.19 humidity 50.0 14400 < th dose independent rect. 15 21
72 50.23 wind 1.0 1440 > th dose independent rect. 10 5
84 50.28 humidity 50.0 14400 > th dose independent sin 13 NA
90 50.29 wind 1.0 1440 > th dose independent rect. 10 8
104 50.36 radiation 30.0 43200 < th dose independent rect. 11 1
108 50.38 humidity 50.0 14400 > th dose independent sin 11 NA
112 50.38 humidity 50.0 14400 > th dose independent rect. 14 11
121 50.39 humidity 50.0 14400 > th dose independent rect. 14 9
125 50.40 humidity 60.0 14400 > th dose independent sin 9 NA
126 50.40 humidity 50.0 14400 < th dose independent sin 10 NA
128 50.40 humidity 50.0 14400 > th dose independent rect. 14 5
133 50.41 precipitation 0.1 43200 > th dose dependent rect. 16 4
140 50.43 humidity 50.0 14400 < th dose independent sin 13 NA
156 50.47 humidity 70.0 14400 < th dose dependent rect. 8 3
172 50.48 humidity 60.0 14400 < th dose dependent rect. 16 19
188 50.53 humidity 60.0 14400 < th dose independent sin 8 NA
198 50.56 humidity 60.0 14400 < th dose dependent sin 11 NA
200 50.57 humidity 50.0 14400 < th dose independent rect. 14 19
203 50.58 humidity 60.0 14400 > th dose independent rect. 22 14
209 50.58 temperature 30.0 270 < th dose independent rect. 10 23
211 50.59 humidity 50.0 14400 < th dose independent rect. 14 4
212 50.59 humidity 60.0 14400 > th dose independent rect. 7 5
238 50.60 humidity 60.0 14400 > th dose independent rect. 9 3
258 50.63 humidity 60.0 14400 < th dose dependent rect. 13 22
260 50.64 humidity 60.0 14400 < th dose independent rect. 6 7
274 50.64 radiation 10.0 43200 > th dose dependent rect. 11 1
279 50.65 humidity 60.0 14400 < th dose independent rect. 8 5
283 50.65 humidity 60.0 14400 < th dose dependent sin 17 NA
287 50.66 wind 1.0 14400 > th dose independent rect. 20 1
288 50.66 radiation 40.0 4320 > th dose independent rect. 15 1
313 50.67 humidity 70.0 14400 < th dose dependent sin 9 NA
330 50.70 humidity 60.0 14400 < th dose dependent rect. 12 8
353 50.73 humidity 60.0 14400 > th dose independent rect. 10 1
432 50.76 humidity 60.0 14400 < th dose dependent no NA NA
554 50.78 wind 1.0 4320 > th dose independent rect. 17 3
604 50.82 wind 1.0 1440 < th dose independent rect. 10 14
619 50.85 temperature 30.0 270 < th dose independent rect. 22 23
620 50.85 humidity 60.0 14400 < th dose dependent rect. 13 1
623 50.85 precipitation 0.1 14400 > th dose dependent rect. 4 5
636 50.88 humidity 70.0 270 < th dose independent rect. 12 8
648 50.88 wind 7.0 43200 > th dose dependent rect. 12 1
658 50.89 radiation 10.0 43200 < th dose dependent rect. 7 2
720 50.92 precipitation 0.1 14400 < th dose independent rect. 4 14
725 50.92 precipitation 0.1 14400 < th dose dependent rect. 4 14
732 50.93 wind 1.0 720 < th dose dependent rect. 12 14
735 50.94 atmosphere 995.0 43200 < th dose independent rect. 16 6
740 50.94 precipitation 0.1 14400 > th dose independent rect. 4 14
757 50.96 precipitation 0.1 14400 > th dose independent rect. 4 5
761 50.96 atmosphere 995.0 43200 < th dose dependent rect. 16 6
763 50.97 precipitation 0.1 43200 < th dose independent rect. 16 2
768 50.97 humidity 70.0 270 > th dose independent rect. 14 20
773 50.97 precipitation 0.1 43200 < th dose dependent rect. 16 2
818 50.99 humidity 60.0 4320 < th dose independent rect. 14 1
819 50.99 wind 1.0 4320 < th dose independent rect. 17 2
835 51.00 humidity 50.0 14400 > th dose independent rect. 15 1
860 51.00 precipitation 0.1 43200 > th dose dependent rect. 13 8
867 51.01 wind 1.0 1440 < th dose independent rect. 12 12
873 51.01 precipitation 0.1 4320 < th dose independent rect. 3 16
881 51.01 precipitation 0.1 4320 < th dose dependent rect. 3 16
902 51.03 humidity 60.0 14400 < th dose independent no NA NA
904 51.03 precipitation 0.1 43200 > th dose independent rect. 16 2
994 51.04 radiation 10.0 43200 > th dose independent rect. 7 1
997 51.04 atmosphere 995.0 43200 < th dose independent rect. 15 8