Os06g0141700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Early nodulin.
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Os06g0141700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Early nodulin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.94 | 0.661 | 3.11 | 0.377 | 0.157 | -0.677 | -0.56 | -1.21 | 0.126 | 8.37 | 1014 | 6244 | -- | -- |
| 204.86 | 0.667 | 3.08 | 0.719 | 0.168 | -0.723 | -0.658 | -- | 0.202 | 8.1 | 1014 | 5985 | -- | -- |
| 198.86 | 0.657 | 3.11 | 0.351 | 0.164 | -0.673 | -- | -1.23 | 0.123 | 7.58 | 1014 | 6243 | -- | -- |
| 206.09 | 0.669 | 3.08 | 0.693 | 0.166 | -0.722 | -- | -- | 0.21 | 7.56 | 1014 | 5995 | -- | -- |
| 200.31 | 0.659 | 3.12 | 0.349 | -- | -0.669 | -- | -1.24 | 0.124 | -- | 1014 | 6243 | -- | -- |
| 226.38 | 0.705 | 3.11 | 0.53 | 0.145 | -- | -0.595 | -- | 0.06 | 8.65 | -- | -- | -- | -- |
| 227.45 | 0.706 | 3.11 | 0.509 | 0.155 | -- | -- | -- | 0.059 | 7.69 | -- | -- | -- | -- |
| 207.63 | 0.671 | 3.08 | 0.69 | -- | -0.715 | -- | -- | 0.208 | -- | 1014 | 5996 | -- | -- |
| 214.43 | 0.682 | 3.1 | -- | 0.191 | -0.816 | -- | -- | 0.106 | 7.17 | 1014 | 4243 | -- | -- |
| 228.74 | 0.707 | 3.11 | 0.511 | -- | -- | -- | -- | 0.0612 | -- | -- | -- | -- | -- |
| 234.27 | 0.716 | 3.12 | -- | 0.159 | -- | -- | -- | 0.00231 | 7.47 | -- | -- | -- | -- |
| 216.05 | 0.685 | 3.1 | -- | -- | -0.82 | -- | -- | 0.106 | -- | 1014 | 4240 | -- | -- |
| 235.62 | 0.716 | 3.13 | -- | -- | -- | -- | -- | 0.00456 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.04 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 4 | 196.30 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 5 | 196.34 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 11 | 196.52 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 49 | 197.14 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 12 |
| 51 | 197.15 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 52 | 197.15 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 125 | 197.46 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 23 | NA |
| 126 | 197.47 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 128 | 197.47 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 130 | 197.48 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 158 | 197.56 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 187 | 197.64 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 284 | 197.96 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 289 | 197.97 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 0 | NA |
| 290 | 197.97 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 0 | NA |
| 340 | 198.12 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 368 | 198.28 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 385 | 198.37 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 434 | 198.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 625 | 199.63 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 629 | 199.65 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 630 | 199.65 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 639 | 199.67 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 17 |
| 762 | 200.13 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 763 | 200.13 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 767 | 200.14 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 21 |
| 774 | 200.14 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 779 | 200.15 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 901 | 200.74 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 925 | 200.83 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 955 | 201.01 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 975 | 201.12 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 976 | 201.13 | atmosphere | 1015 | 4320 | < th | dose independent | no | NA | NA |
| 979 | 201.13 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 981 | 201.14 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 982 | 201.14 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 17 | 22 |