FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0141600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Early nodulin 93 ENOD93 protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0393) R2 : 0.182
β1 : -0.81 (0.154) R2dD : 0.0607 R2D : -0.00951
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.0491 (0.397) R2dE : 6.33e-05 R2E : 2.35e-05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.8 (3.68) R2dD*E : 0.167 R2D*E : 0.0928
γ1 : -0.366 (0.0852) R2dN8 : 0.047 R2N8 : -0.00253
σ : 0.725
deviance : 242.26
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.94
memory length : 29
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.02
open length of G : 0.996

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.68 0.72 3.21 -0.807 0.252 0.035 -0.151 -22.8 -0.367 8.31 20 30 2 1
258.94 0.755 3.24 -0.443 0.251 1.84 -0.236 -- -0.373 7.97 20 30 2 1
238.73 0.72 3.21 -0.811 0.251 0.0446 -- -22.8 -0.367 8.6 19.97 30 2.02 1
259 0.754 3.24 -0.448 0.251 1.87 -- -- -0.373 8.62 19.9 28 2 1.32
242.26 0.725 3.22 -0.81 -- 0.0491 -- -22.8 -0.366 -- 19.94 29 2.02 0.996
282.23 0.788 3.22 -0.447 0.282 -- -0.957 -- -0.238 5.67 -- -- -- --
283.88 0.789 3.21 -0.449 0.295 -- -- -- -0.232 6.95 -- -- -- --
262.54 0.755 3.25 -0.448 -- 1.87 -- -- -0.369 -- 19.66 28 2.01 1.31
264.24 0.757 3.23 -- 0.252 1.87 -- -- -0.32 8.81 18.8 28 2 1.2
288.46 0.794 3.22 -0.443 -- -- -- -- -0.227 -- -- -- -- --
289.21 0.796 3.2 -- 0.29 -- -- -- -0.182 7.05 -- -- -- --
267.82 0.765 3.24 -- -- 1.87 -- -- -0.322 -- 19.66 28 2.01 1.31
293.65 0.8 3.21 -- -- -- -- -- -0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.68 temperature 20.0 30 > th dose independent rect. 2 1
2 238.97 temperature 20.0 30 > th dose dependent rect. 2 1
5 239.20 humidity 80.0 30 > th dose independent rect. 2 1
8 239.58 wind 9.0 30 < th dose independent rect. 2 1
9 239.58 temperature 10.0 30 > th dose independent rect. 2 1
11 239.58 temperature 30.0 30 < th dose independent rect. 2 1
12 239.58 humidity 50.0 30 > th dose independent rect. 2 1
15 239.58 atmosphere 995.0 30 > th dose independent rect. 2 1
16 239.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
18 239.58 radiation 1.0 30 < th dose independent rect. 2 1
23 239.58 precipitation 0.1 30 < th dose independent rect. 2 1
24 239.58 temperature 10.0 30 > th dose independent rect. 3 23
25 239.58 radiation 1.0 30 < th dose dependent rect. 2 1
30 239.58 precipitation 0.1 30 < th dose dependent rect. 2 1
31 239.65 humidity 50.0 30 > th dose dependent rect. 2 1
32 239.65 atmosphere 995.0 30 > th dose dependent rect. 2 1
33 239.67 wind 5.0 30 < th dose independent rect. 2 1
40 239.77 atmosphere 1015.0 30 < th dose dependent rect. 2 1
41 239.79 wind 9.0 30 < th dose dependent rect. 2 1
48 240.26 wind 1.0 30 > th dose independent rect. 2 1
53 241.04 temperature 30.0 30 < th dose dependent rect. 2 1
64 242.92 radiation 10.0 4320 < th dose dependent rect. 3 1
66 242.93 wind 9.0 1440 < th dose independent rect. 3 1
67 242.93 temperature 10.0 1440 > th dose independent rect. 3 1
70 242.93 temperature 30.0 1440 < th dose independent rect. 3 1
74 242.93 humidity 50.0 1440 > th dose independent rect. 3 1
83 242.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 242.93 radiation 1.0 1440 < th dose independent rect. 3 1
104 242.93 temperature 10.0 1440 > th dose independent rect. 4 23
161 244.41 atmosphere 995.0 30 > th dose independent rect. 3 23
180 249.75 precipitation 0.1 30 < th dose independent rect. 3 23
181 249.75 precipitation 0.1 30 < th dose dependent rect. 3 23
186 251.26 wind 9.0 30 < th dose independent rect. 3 23
189 252.99 atmosphere 1000.0 10 < th dose independent rect. 8 2
191 253.52 atmosphere 1000.0 90 < th dose independent rect. 8 1
208 255.71 temperature 30.0 90 > th dose dependent rect. 18 16
210 255.79 temperature 30.0 90 > th dose dependent rect. 8 1
224 255.82 temperature 30.0 90 > th dose independent rect. 8 1
254 256.15 atmosphere 1000.0 10 < th dose dependent rect. 8 2
255 256.20 humidity 50.0 30 > th dose independent rect. 3 23
311 256.64 atmosphere 1000.0 90 < th dose dependent rect. 7 3
312 256.65 atmosphere 1000.0 90 < th dose dependent rect. 8 1
335 257.15 atmosphere 1000.0 10 < th dose dependent rect. 10 1
338 257.29 temperature 30.0 90 > th dose independent rect. 18 16
533 262.20 wind 1.0 30 < th dose independent rect. 8 19
558 263.34 wind 1.0 30 < th dose independent rect. 11 16
559 263.43 temperature 25.0 270 > th dose independent rect. 23 4
569 263.95 wind 1.0 30 < th dose independent rect. 22 5
574 264.07 wind 1.0 30 < th dose independent rect. 17 10
605 264.87 wind 1.0 30 > th dose independent rect. 3 23
634 265.26 wind 1.0 10 < th dose independent rect. 2 8
643 265.41 radiation 40.0 30 < th dose dependent rect. 3 23
645 265.50 wind 1.0 10 > th dose independent sin 5 NA
652 265.64 atmosphere 1015.0 30 < th dose independent rect. 3 23
666 265.92 wind 3.0 90 > th dose dependent rect. 4 1
692 266.38 atmosphere 1000.0 720 > th dose independent rect. 3 8
724 266.72 temperature 30.0 30 < th dose independent rect. 3 23
762 267.07 wind 1.0 10 > th dose independent sin 18 NA
836 267.70 wind 3.0 90 > th dose independent rect. 4 1
838 267.72 atmosphere 1000.0 720 > th dose independent rect. 3 4
850 267.86 radiation 40.0 10 < th dose independent rect. 3 23
859 268.01 atmosphere 1000.0 90 > th dose independent rect. 3 12
864 268.12 wind 1.0 10 < th dose independent rect. 2 4
865 268.12 wind 1.0 10 < th dose independent rect. 2 16
869 268.13 wind 1.0 10 < th dose independent rect. 2 14
914 268.44 wind 1.0 10 > th dose independent rect. 19 23
923 268.53 wind 1.0 10 > th dose independent sin 13 NA
926 268.54 wind 1.0 10 > th dose independent no NA NA
929 268.56 wind 1.0 30 < th dose dependent rect. 9 18
944 268.70 wind 1.0 10 < th dose independent rect. 2 21
953 268.76 wind 1.0 720 > th dose independent rect. 15 8
962 268.81 humidity 50.0 30 > th dose dependent rect. 3 23
965 268.83 atmosphere 1000.0 10 < th dose dependent rect. 4 7
997 269.21 humidity 60.0 720 > th dose dependent rect. 3 2