Os06g0140900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sigma factor, regions 3 and 4 domain containing protein.
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Os06g0140900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sigma factor, regions 3 and 4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.26 | 0.71 | 9.13 | -3.19 | 1.95 | 1.43 | -0.267 | -2.49 | 0.328 | 3.58 | 21.6 | 1143 | -- | -- |
| 243.39 | 0.727 | 9.08 | -2.59 | 1.96 | 1.67 | -0.421 | -- | 0.426 | 3.49 | 21.4 | 1328 | -- | -- |
| 228.47 | 0.704 | 9.13 | -3.19 | 1.95 | 1.43 | -- | -2.51 | 0.328 | 3.59 | 21.6 | 1137 | -- | -- |
| 244.18 | 0.728 | 9.05 | -2.55 | 1.98 | 1.65 | -- | -- | 0.471 | 3.42 | 21.5 | 1328 | -- | -- |
| 437.69 | 0.974 | 9.15 | -3.22 | -- | 1.69 | -- | -2.53 | 0.303 | -- | 21.52 | 1121 | -- | -- |
| 322.46 | 0.842 | 8.95 | -1.89 | 2.07 | -- | -0.808 | -- | 0.937 | 3.32 | -- | -- | -- | -- |
| 324.53 | 0.844 | 8.95 | -1.88 | 2.07 | -- | -- | -- | 0.942 | 3.34 | -- | -- | -- | -- |
| 452.71 | 0.991 | 9.07 | -2.53 | -- | 1.85 | -- | -- | 0.463 | -- | 21.4 | 1108 | -- | -- |
| 389.9 | 0.92 | 9.02 | -- | 2.03 | 0.864 | -- | -- | 0.824 | 3.49 | 22.3 | 1477 | -- | -- |
| 565.97 | 1.11 | 8.95 | -1.79 | -- | -- | -- | -- | 0.997 | -- | -- | -- | -- | -- |
| 417.3 | 0.956 | 8.9 | -- | 2.03 | -- | -- | -- | 1.15 | 3.34 | -- | -- | -- | -- |
| 592.84 | 1.13 | 8.98 | -- | -- | 1.11 | -- | -- | 0.857 | -- | 22.4 | 1091 | -- | -- |
| 650.34 | 1.19 | 8.9 | -- | -- | -- | -- | -- | 1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 7 | 229.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 34 | 231.87 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 35 | 231.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 78 | 233.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 162 | 234.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 219 | 235.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 269 | 235.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 289 | 235.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 309 | 236.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 329 | 236.12 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 547 | 237.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 570 | 237.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 620 | 237.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 625 | 237.93 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 695 | 238.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 796 | 238.71 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 907 | 239.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 943 | 239.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |