Os06g0140800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0140800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.7 | 0.384 | 10.6 | 0.742 | 0.136 | -1.04 | 1.66 | 2.04 | 0.706 | 0.0902 | 25.2 | 97 | -- | -- |
| 68.13 | 0.384 | 10.6 | 0.531 | 0.147 | -0.895 | 1.54 | -- | 0.658 | 23.9 | 25.02 | 98 | -- | -- |
| 77.15 | 0.409 | 10.7 | 0.46 | 0.167 | -0.881 | -- | 0.31 | 0.62 | 2.6 | 25.18 | 81 | -- | -- |
| 77.1 | 0.409 | 10.6 | 0.433 | 0.178 | -0.852 | -- | -- | 0.634 | 2.58 | 25.15 | 78 | -- | -- |
| 78.27 | 0.412 | 10.6 | 0.517 | -- | -1.04 | -- | 0.454 | 0.665 | -- | 25.1 | 82 | -- | -- |
| 80.74 | 0.421 | 10.7 | 0.343 | 0.482 | -- | 1.58 | -- | 0.584 | 2.1 | -- | -- | -- | -- |
| 88.98 | 0.442 | 10.7 | 0.294 | 0.519 | -- | -- | -- | 0.572 | 3.22 | -- | -- | -- | -- |
| 78.34 | 0.412 | 10.6 | 0.465 | -- | -1 | -- | -- | 0.655 | -- | 25.02 | 74 | -- | -- |
| 81.87 | 0.421 | 10.7 | -- | 0.225 | -0.757 | -- | -- | 0.59 | 2.75 | 25.23 | 73 | -- | -- |
| 104.28 | 0.477 | 10.7 | 0.316 | -- | -- | -- | -- | 0.586 | -- | -- | -- | -- | -- |
| 91.27 | 0.447 | 10.7 | -- | 0.525 | -- | -- | -- | 0.539 | 3.22 | -- | -- | -- | -- |
| 83.91 | 0.427 | 10.7 | -- | -- | -0.938 | -- | -- | 0.597 | -- | 25.1 | 75 | -- | -- |
| 106.92 | 0.483 | 10.7 | -- | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 14 | 65.04 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 16 | 65.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 17 | 65.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 23 | 65.33 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 40 | 65.74 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 49 | 65.83 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 21 |
| 50 | 65.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 51 | 65.85 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 64 | 66.04 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 22 |
| 67 | 66.07 | radiation | 1 | 720 | < th | dose dependent | sin | 3 | NA |
| 69 | 66.08 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 11 |
| 85 | 66.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 97 | 66.27 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 105 | 66.35 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 106 | 66.35 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 111 | 66.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 117 | 66.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 119 | 66.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 130 | 66.45 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 12 |
| 131 | 66.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 147 | 66.55 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 152 | 66.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 171 | 66.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 177 | 66.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 229 | 66.77 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 288 | 66.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 298 | 66.95 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 23 |
| 300 | 66.96 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 15 |
| 323 | 67.03 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 22 |
| 325 | 67.05 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 21 |
| 334 | 67.07 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 353 | 67.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 387 | 67.23 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 16 |
| 392 | 67.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 423 | 67.30 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 452 | 67.37 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 17 |
| 453 | 67.37 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 458 | 67.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 540 | 67.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 593 | 67.64 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 631 | 67.70 | humidity | 80 | 720 | > th | dose independent | rect. | 13 | 23 |
| 638 | 67.71 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 640 | 67.71 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 21 |
| 670 | 67.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 681 | 67.76 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 683 | 67.76 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |
| 690 | 67.77 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 21 |
| 709 | 67.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 758 | 67.85 | humidity | 90 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 785 | 67.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 786 | 67.90 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 23 |
| 806 | 67.93 | humidity | 90 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 807 | 67.93 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 18 |
| 812 | 67.94 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 16 |
| 814 | 67.94 | humidity | 90 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 848 | 67.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 863 | 68.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 868 | 68.01 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 873 | 68.02 | radiation | 10 | 720 | > th | dose independent | rect. | 14 | 19 |
| 880 | 68.03 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 7 |
| 942 | 68.08 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 968 | 68.10 | humidity | 80 | 720 | < th | dose independent | sin | 22 | NA |
| 969 | 68.10 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |