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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0140300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0334) R2 : 0.373
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.117) R2dE : 0.346 R2E : 0.365
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.156 (0.0716) R2dN8 : 0.00874 R2N8 : 0.0269
σ : 0.625
deviance : 180.29
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C
peak time of C : --
E
wheather : temperature
threshold : 22.37
memory length : 382
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.05 0.625 3.55 0.563 0.0532 1.71 0.392 1.57 0.262 4.82 22.05 363 -- --
177.96 0.621 3.57 0.306 0.163 1.88 0.173 -- 0.224 4.33 23.43 355 -- --
177.33 0.62 3.56 0.532 0.0775 1.71 -- 1.4 0.249 2.59 22.1 345 -- --
177.9 0.621 3.58 0.29 0.141 1.85 -- -- 0.22 5.47 23.41 378 -- --
177.42 0.62 3.56 0.522 -- 1.67 -- 1.25 0.257 -- 22.16 376 -- --
238.79 0.724 3.54 0.665 0.692 -- 0.621 -- 0.471 17.7 -- -- -- --
239.74 0.725 3.54 0.662 0.696 -- -- -- 0.474 17.7 -- -- -- --
178.2 0.622 3.58 0.289 -- 1.76 -- -- 0.2 -- 22.55 379 -- --
179.7 0.624 3.59 -- 0.135 1.91 -- -- 0.149 5.33 22.64 376 -- --
264.86 0.76 3.53 0.64 -- -- -- -- 0.457 -- -- -- -- --
251.29 0.742 3.55 -- 0.685 -- -- -- 0.4 17.7 -- -- -- --
180.29 0.625 3.59 -- -- 1.81 -- -- 0.156 -- 22.37 382 -- --
275.66 0.775 3.54 -- -- -- -- -- 0.386 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.88 temperature 20 270 > th dose dependent rect. 7 23
3 178.10 temperature 20 270 > th dose dependent rect. 9 18
14 179.44 temperature 20 270 > th dose dependent rect. 9 14
16 179.46 temperature 20 270 > th dose dependent rect. 4 23
17 179.61 temperature 25 720 > th dose dependent rect. 20 18
21 179.67 temperature 20 10 > th dose dependent sin 17 NA
41 180.34 temperature 10 720 > th dose dependent rect. 4 15
45 180.47 temperature 20 270 > th dose dependent rect. 1 23
48 180.48 temperature 20 270 > th dose dependent no NA NA
50 180.54 temperature 25 720 > th dose dependent sin 8 NA
51 180.54 temperature 20 720 > th dose dependent rect. 2 17
58 180.73 temperature 10 720 > th dose dependent rect. 4 17
69 180.89 temperature 20 720 > th dose dependent sin 1 NA
84 181.16 temperature 20 270 > th dose dependent sin 20 NA
98 181.32 temperature 20 270 > th dose dependent rect. 22 23
216 182.49 temperature 25 270 > th dose dependent rect. 16 23
242 182.76 temperature 30 720 < th dose dependent rect. 5 15
327 183.33 temperature 10 720 > th dose dependent rect. 20 23
371 183.64 temperature 30 270 < th dose dependent sin 20 NA
413 183.80 temperature 30 90 < th dose dependent sin 18 NA
434 183.92 temperature 30 10 < th dose dependent sin 17 NA
487 184.17 temperature 10 720 > th dose dependent rect. 18 23
508 184.23 temperature 30 720 < th dose independent rect. 6 9
534 184.32 temperature 30 720 < th dose dependent sin 0 NA
561 184.43 temperature 30 720 > th dose independent rect. 11 2
591 184.53 temperature 20 1440 > th dose dependent rect. 21 2
631 184.71 temperature 20 1440 > th dose dependent rect. 16 11
641 184.75 temperature 25 720 > th dose dependent rect. 7 7
675 184.87 temperature 10 1440 > th dose dependent rect. 16 20
677 184.88 temperature 20 1440 > th dose dependent rect. 21 4
719 184.99 temperature 30 720 < th dose independent rect. 21 17
760 185.10 temperature 20 720 > th dose dependent rect. 7 10
899 185.47 temperature 10 1440 > th dose dependent rect. 16 10
905 185.48 temperature 30 720 > th dose independent rect. 18 20
917 185.51 temperature 10 1440 > th dose dependent rect. 15 12
928 185.53 temperature 30 1440 < th dose dependent rect. 16 19
971 185.61 temperature 30 720 < th dose independent rect. 19 20
983 185.64 temperature 25 1440 < th dose independent rect. 20 1